DataElement
publicId 6347743
version 2
longName Sequencing Library Creation Method Type
shortName SEQ_LIB_CREATE_METH_TP
definition The type of systematic actions performed to select or enrich DNA fragments used in analysis by high-throughput sequencing.
context MCL
origin MCL:Molecular and Cellular Characterization of Screened Lesions
workflowStatus RELEASED
registrationStatus Qualified
latestVersionIndicator Yes
beginDate 2018-07-10
endDate
changeDescription 3/1/22 jk Designated, added CDS alt name and CSI. 12/16/21 jk upd LN to remove dup term. 6/3/20 jk AQT added for caps; removed Library CSI, added MCL Genomics Core CSI. 11/19/18 jk Released per PI/Maureen at Oct 2018 Steering Comm meeting. 7/10/18 jk created for MCL Genomics based on Sequence Read Archive (SRA) data element.
administrativeNotes 5/21/25 Classified in GDC Candidate CSI, added alt name, alt def, per June 2025 GDC DD. sl; 10/29/24 per Henry/CodeMap task, add alt table LS;6/27/24 Released for reuse by CCDI-Fed. mr; 6/17/24 Upd change note to specify which 2 PVs were deleted. mr; 4/19/24 Poly-A Enrichment replaced Poly-T Enrichment and PolyA; OligoDT removed, cDNA oligo_dT added per SMEs. mr; 4/18/24 Versioned to 2.0 in order to delete 2 PVs (poly A and oligo_dT) from v1.0. mr; 1/19/23 Added CDS ref doc EXAMPLE; removed general CDS CSI, added CDS|Sequencing CSI; per metadata template. mr
unresolvedIssues
deletedIndicator No
createdBy COLBERTM
dateCreated 2024-04-18
modifiedBy SLAUER
dateModified 2025-05-21
DataElementConcept
publicId 6273331
version 1
longName Sequencing Library Creation Method
shortName 6273321v1.0:6273329v1.0
definition A collection of double stranded DNA fragments flanked by oligonucleotide sequence adapters to enable their analysis by high-throughput sequencing._The process by which something is brought into existence; having been brought into existence._A means, manner of procedure, or systematic course of actions that have to be performed in order to accomplish a particular goal.
context MCL
origin MCL:Molecular and Cellular Characterization of Screened Lesions
workflowStatus RELEASED
registrationStatus Qualified
latestVersionIndicator Yes
beginDate 2018-05-11
endDate
changeDescription 10/21/20 jk per SME, moved DEC from Library CSI to MCL Genomics Core CSI. 11/19/18 jk Released per PI/Maureen at Oct 2018 Steering Comm meeting. 5/11/18 jk created for MCL Genomics based on Sequence Read Archive (SRA) data element.
administrativeNotes
unresolvedIssues
deletedIndicator No
createdBy KNABLEJ
dateCreated 2018-05-11
modifiedBy KNABLEJ
dateModified 2020-10-21
ObjectClass
publicId 6273321
version 1
longName Sequencing Library
shortName C148073
definition A collection of double stranded DNA fragments flanked by oligonucleotide sequence adapters to enable their analysis by high-throughput sequencing.
context NCIP
origin NCI Thesaurus
workflowStatus RELEASED
registrationStatus Application
latestVersionIndicator Yes
beginDate 2018-05-11
endDate
changeDescription
administrativeNotes
unresolvedIssues
deletedIndicator No
createdBy KNABLEJ
dateCreated 2018-05-11
modifiedBy ONEDATA
dateModified 2018-05-11
Concepts
longName Sequencing Library
conceptCode C148073
definition A collection of double stranded DNA fragments flanked by oligonucleotide sequence adapters to enable their analysis by high-throughput sequencing.
evsSource NCI_CONCEPT_CODE
primaryIndicator Yes
displayOrder 0
Property
publicId 6273329
version 1
longName Creation Method
shortName C42620:C71460
definition The process by which something is brought into existence; having been brought into existence.:A means, manner of procedure, or systematic course of actions that have to be performed in order to accomplish a particular goal.
context NCIP
origin
workflowStatus RELEASED
registrationStatus Application
latestVersionIndicator Yes
beginDate 2018-05-11
endDate
changeDescription
administrativeNotes
unresolvedIssues
deletedIndicator No
createdBy KNABLEJ
dateCreated 2018-05-11
modifiedBy ONEDATA
dateModified 2018-05-11
Concepts
longName Creation
conceptCode C42620
definition The process by which something is brought into existence; having been brought into existence.
evsSource NCI_CONCEPT_CODE
primaryIndicator No
displayOrder 1
longName Method
conceptCode C71460
definition A means, manner of procedure, or systematic course of actions that have to be performed in order to accomplish a particular goal.
evsSource NCI_CONCEPT_CODE
primaryIndicator Yes
displayOrder 0
ConceptualDomain
publicId 2435028
version 1
longName Gene Product
shortName C26548
definition A protein or RNA whose structure is represented in and determined by genomic sequences.
context NCIP
origin NCI Thesaurus
workflowStatus RELEASED
registrationStatus Application
latestVersionIndicator Yes
beginDate 2005-12-06
endDate
changeDescription
administrativeNotes
unresolvedIssues
deletedIndicator No
createdBy CURTIST
dateCreated 2005-12-06
modifiedBy SBR
dateModified 2006-12-20
ValueDomain
publicId 6287015
version 2
longName Sequencing Library Method Type
shortName 6287015v2.00
definition A collection of double stranded DNA fragments flanked by oligonucleotide sequence adapters to enable their analysis by high-throughput sequencing._A means, manner of procedure, or systematic course of actions that have to be performed in order to accomplish a particular goal._Something distinguishable as an identifiable class based on common qualities.
context MCL
type Enumerated
dataType CHARACTER
minLength
maxLength 45
minValue
maxValue
decimalPlace
origin MCL:Molecular and Cellular Characterization of Screened Lesions
workflowStatus RELEASED
registrationStatus Qualified
latestVersionIndicator Yes
beginDate 2018-05-15
endDate
changeDescription 3/31/21 jk Revised "Not applicable" per 2021 template review. 3/16/21 jk Added 2 PVs for MCL Genomic Core update. 12/22/20 jk Added PVs per Dec 2020 Data Dictionary review; 1 PV pending def from SME. 10/21/20 jk per SME, moved DEC from Library CSI to MCL Genomics Core CSI. 11/19/18 jk Released per PI/Maureen at Oct 2018 Steering Comm meeting. 5/15/18 jk created for MCL Genomics based on Sequence Read Archive (SRA) data element.
administrativeNotes 6/17/24 Upd change note to specify which 2 PVs were deleted. 4/18/24 Versioned to 2.0 in order to delete 2 PVs (poly A and oligo_dT) from v1.0. mr
unresolvedIssues
deletedIndicator No
createdBy COLBERTM
dateCreated 2024-04-18
modifiedBy COLBERTM
dateModified 2024-06-17
PermissibleValues
publicId 9158818
value ChIP
valueDescription Chromatin Immunoprecipitation
origin
beginDate 2018-05-15
endDate
deletedIndicator No
createdBy KNABLEJ
dateCreated 2024-04-18
modifiedBy ONEDATA
dateModified 2024-04-18
ValueMeaning
publicId 6287017
version 1
longName Chromatin Immunoprecipitation
shortName 6287017
definition A technique that utilizes immunoprecipitation to find protein-DNA interactions in a biological sample. First, the sample is treated causing the formation of protein-chromatin crosslinks. Then, the sample is sheared to separate individual protein-DNA complexes. Finally, an antibody directed against a protein of interest is applied and the protein-DNA complexes are immunoprecipitated.
context NCIP
origin
workflowStatus RELEASED
registrationStatus Application
latestVersionIndicator Yes
beginDate 2018-05-15
endDate
changeDescription
administrativeNotes
unresolvedIssues
deletedIndicator No
createdBy KNABLEJ
dateCreated 2018-05-15
modifiedBy ONEDATA
dateModified 2018-05-15
Concepts
longName Chromatin Immunoprecipitation
conceptCode C106048
definition A technique that utilizes immunoprecipitation to find protein-DNA interactions in a biological sample. First, the sample is treated causing the formation of protein-chromatin crosslinks. Then, the sample is sheared to separate individual protein-DNA complexes. Finally, an antibody directed against a protein of interest is applied and the protein-DNA complexes are immunoprecipitated.
evsSource NCI_CONCEPT_CODE
primaryIndicator Yes
displayOrder 0
publicId 9158819
value CF-M
valueDescription Cot-filtered moderately repetitive
origin
beginDate 2018-05-15
endDate
deletedIndicator No
createdBy KNABLEJ
dateCreated 2024-04-18
modifiedBy ONEDATA
dateModified 2024-04-18
ValueMeaning
publicId 6287018
version 1
longName Cot-filtered moderately repetitive
shortName 6287018
definition Cot-filtered moderately repetitive genomic DNA
context NCIP
origin
workflowStatus RELEASED
registrationStatus Application
latestVersionIndicator Yes
beginDate 2018-05-15
endDate
changeDescription
administrativeNotes
unresolvedIssues
deletedIndicator No
createdBy KNABLEJ
dateCreated 2018-05-15
modifiedBy ONEDATA
dateModified 2018-05-15
publicId 9158820
value CF-S
valueDescription Cot-filtered single
origin
beginDate 2018-05-15
endDate
deletedIndicator No
createdBy KNABLEJ
dateCreated 2024-04-18
modifiedBy ONEDATA
dateModified 2024-04-18
ValueMeaning
publicId 6287019
version 1
longName Cot-filtered single
shortName 6287019
definition Cot-filtered single/low-copy genomic DNA
context NCIP
origin
workflowStatus RELEASED
registrationStatus Application
latestVersionIndicator Yes
beginDate 2018-05-15
endDate
changeDescription
administrativeNotes
unresolvedIssues
deletedIndicator No
createdBy KNABLEJ
dateCreated 2018-05-15
modifiedBy ONEDATA
dateModified 2018-05-15
publicId 9158821
value MF
valueDescription Methyl Filtrated
origin
beginDate 2018-05-15
endDate
deletedIndicator No
createdBy KNABLEJ
dateCreated 2024-04-18
modifiedBy ONEDATA
dateModified 2024-04-18
ValueMeaning
publicId 6287020
version 1
longName Methyl Filtrated
shortName 6287020
definition Methyl Filtrated
context NCIP
origin
workflowStatus RELEASED
registrationStatus Application
latestVersionIndicator Yes
beginDate 2018-05-15
endDate
changeDescription
administrativeNotes
unresolvedIssues
deletedIndicator No
createdBy KNABLEJ
dateCreated 2018-05-15
modifiedBy ONEDATA
dateModified 2018-05-15
publicId 9158822
value HMPR
valueDescription HMPR
origin
beginDate 2018-05-15
endDate
deletedIndicator No
createdBy KNABLEJ
dateCreated 2024-04-18
modifiedBy ONEDATA
dateModified 2024-04-18
ValueMeaning
publicId 6287021
version 1
longName HMPR
shortName 6287021
definition Hypo-methylated partial restriction digest
context NCIP
origin
workflowStatus RELEASED
registrationStatus Application
latestVersionIndicator Yes
beginDate 2018-05-15
endDate
changeDescription
administrativeNotes
unresolvedIssues
deletedIndicator No
createdBy KNABLEJ
dateCreated 2018-05-15
modifiedBy ONEDATA
dateModified 2018-05-15
publicId 9158823
value RT-PCR
valueDescription RT-PCR
origin
beginDate 2018-05-15
endDate
deletedIndicator No
createdBy KNABLEJ
dateCreated 2024-04-18
modifiedBy ONEDATA
dateModified 2024-04-18
ValueMeaning
publicId 3121570
version 1
longName RT-PCR
shortName 3121570
definition RT-PCR is short for reverse transcriptase-polymerase chain reaction. It is a technique in which an RNA strand is first transcribed into a DNA complement and then subjected to PCR amplification. Transcribing an RNA strand into a DNA complement is termed reverse transcription and is done by the enzyme reverse transcriptase. (from Wikipedia)
context NCIP
origin
workflowStatus RELEASED
registrationStatus Application
latestVersionIndicator Yes
beginDate 2010-07-14
endDate
changeDescription
administrativeNotes
unresolvedIssues
deletedIndicator No
createdBy REEVESD
dateCreated 2010-07-14
modifiedBy SBR
dateModified 2018-01-19
Concepts
longName Reverse Transcriptase-Polymerase Chain Reaction
conceptCode C18136
definition A laboratory procedure in which an RNA strand is first transcribed into a DNA complement and then subjected to PCR amplification. Transcribing an RNA strand into a DNA complement is termed reverse transcription and is done by the enzyme reverse transcriptase.
evsSource NCI_CONCEPT_CODE
primaryIndicator Yes
displayOrder 0
publicId 9158824
value Random PCR
valueDescription Random PCR
origin
beginDate 2018-05-15
endDate
deletedIndicator No
createdBy KNABLEJ
dateCreated 2024-04-18
modifiedBy ONEDATA
dateModified 2024-04-18
ValueMeaning
publicId 6287022
version 1
longName Random PCR
shortName 6287022
definition Source material was selected by randomly generated primers
context NCIP
origin
workflowStatus RELEASED
registrationStatus Application
latestVersionIndicator Yes
beginDate 2018-05-15
endDate
changeDescription
administrativeNotes
unresolvedIssues
deletedIndicator No
createdBy KNABLEJ
dateCreated 2018-05-15
modifiedBy ONEDATA
dateModified 2018-05-15
Designations
languageName ENGLISH
name RANDOM PCR
type CONTEXT NAME
context MCL
id 6C3F2828-6310-677F-E053-F662850A5F7B
createdBy Janice Knable
dateCreated 2018-05-15
modifiedBy ONEDATA
dateModified 2018-05-15
publicId 9158825
value PCR
valueDescription Polymerase Chain Reaction
origin
beginDate 2018-05-15
endDate
deletedIndicator No
createdBy KNABLEJ
dateCreated 2024-04-18
modifiedBy ONEDATA
dateModified 2024-04-18
ValueMeaning
publicId 3234683
version 1
longName Polymerase Chain Reaction
shortName 3234683
definition A method for amplifying a DNA base sequence using multiple rounds of heat denaturation of the DNA and annealing of oligonucleotide primers complementary to flanking regions in the presence of a heat-stable polymerase. This results in duplication of the targeted DNA region. Newly synthesized DNA strands can subsequently serve as additional templates for the same primer sequences, so that successive rounds of primer annealing, strand elongation, and dissociation produce rapid and highly specific amplification of the desired sequence. PCR also can be used to detect the existence of the defined sequence in a DNA sample.
context NCIP
origin
workflowStatus RELEASED
registrationStatus Application
latestVersionIndicator Yes
beginDate 2011-05-12
endDate
changeDescription 7-20-20 TMT updated concept with NCIt definition.
administrativeNotes
unresolvedIssues
deletedIndicator No
createdBy COOPERM
dateCreated 2011-05-12
modifiedBy CLOHNES
dateModified 2025-03-27
Concepts
longName Polymerase Chain Reaction
conceptCode C17003
definition A method for amplifying a DNA base sequence using multiple rounds of heat denaturation of the DNA and annealing of oligonucleotide primers complementary to flanking regions in the presence of a heat-stable polymerase. This results in duplication of the targeted DNA region. Newly synthesized DNA strands can subsequently serve as additional templates for the same primer sequences, so that successive rounds of primer annealing, strand elongation, and dissociation produce rapid and highly specific amplification of the desired sequence. PCR also can be used to detect the existence of the defined sequence in a DNA sample.
evsSource NCI_CONCEPT_CODE
primaryIndicator Yes
displayOrder 0
Designations
languageName ENGLISH
name PCR
type VM Alt Name
context CTEP
id F2D8CF9C-2D41-A73A-E040-BB89AD430448
createdBy Stephanie Rouillard
dateCreated 2014-02-20
modifiedBy ONEDATA
dateModified 2014-02-20
languageName ENGLISH
name probe and target amplification
type Sentinel Name
context CDMH
id 72F686B3-1FE0-7C94-E053-F662850AFAFB
createdBy Gwen Hartley Deen
dateCreated 2018-08-08
modifiedBy ONEDATA
dateModified 2018-08-08
languageName ENGLISH
name Polymerase chain reaction (PCR)
type VM Alt Name
context COG
id B3621C69-F943-528C-E053-4EBD850A8905
createdBy Linda Springer
dateCreated 2020-11-05
modifiedBy ONEDATA
dateModified 2020-11-05
languageName ENGLISH
name PCR
type VM Alt Name
context COG
id DDA700DC-94B9-4E39-E053-4EBD850A6894
createdBy Angela Kummerow
dateCreated 2022-04-27
modifiedBy ONEDATA
dateModified 2022-04-27
languageName ENGLISH
name PCR
type VM Alt Name
context Theradex
id 0B73429D-558E-66FD-E063-731AD00AB6B3
createdBy Lamia Sokker
dateCreated 2023-12-01
modifiedBy SOKKERL
dateModified 2023-12-01
publicId 9158826
value Random
valueDescription Random
origin
beginDate 2018-05-15
endDate
deletedIndicator No
createdBy KNABLEJ
dateCreated 2024-04-18
modifiedBy ONEDATA
dateModified 2024-04-18
ValueMeaning
publicId 6287023
version 1
longName Random
shortName 6287023
definition Random selection by shearing or other method
context NCIP
origin
workflowStatus RELEASED
registrationStatus Application
latestVersionIndicator Yes
beginDate 2018-05-15
endDate
changeDescription
administrativeNotes
unresolvedIssues
deletedIndicator No
createdBy KNABLEJ
dateCreated 2018-05-15
modifiedBy ONEDATA
dateModified 2018-05-15
Designations
languageName ENGLISH
name RANDOM
type CONTEXT NAME
context MCL
id 6C3F2828-6340-677F-E053-F662850A5F7B
createdBy Janice Knable
dateCreated 2018-05-15
modifiedBy ONEDATA
dateModified 2018-05-15
publicId 9158828
value Inverse rRNA
valueDescription Inverse rRNA
origin
beginDate 2018-05-15
endDate
deletedIndicator No
createdBy KNABLEJ
dateCreated 2024-04-18
modifiedBy ONEDATA
dateModified 2024-04-18
ValueMeaning
publicId 6287897
version 1
longName Inverse rRNA
shortName 6287897
definition Depletion of ribosomal RNA by oligo hybridization.
context NCIP
origin
workflowStatus RELEASED
registrationStatus Application
latestVersionIndicator Yes
beginDate 2018-05-15
endDate
changeDescription
administrativeNotes
unresolvedIssues
deletedIndicator No
createdBy KNABLEJ
dateCreated 2018-05-15
modifiedBy ONEDATA
dateModified 2018-05-15
publicId 9158829
value cDNA random priming
valueDescription cDNA random priming
origin
beginDate 2018-05-15
endDate
deletedIndicator No
createdBy KNABLEJ
dateCreated 2024-04-18
modifiedBy ONEDATA
dateModified 2024-04-18
ValueMeaning
publicId 6287898
version 1
longName cDNA random priming
shortName 6287898
definition Oligodeoxyribonucleotides (mostly hexamers) used to prepare labeled DNA probes.
context NCIP
origin
workflowStatus RELEASED
registrationStatus Application
latestVersionIndicator Yes
beginDate 2018-05-15
endDate
changeDescription
administrativeNotes
unresolvedIssues
deletedIndicator No
createdBy KNABLEJ
dateCreated 2018-05-15
modifiedBy ONEDATA
dateModified 2018-05-15
publicId 9158830
value cDNA oligo_dT
valueDescription cDNA_oligo_dT
origin
beginDate 2018-05-15
endDate
deletedIndicator No
createdBy KNABLEJ
dateCreated 2024-04-18
modifiedBy ONEDATA
dateModified 2024-04-18
ValueMeaning
publicId 6287899
version 1
longName cDNA_oligo_dT
shortName 6287899
definition Primers consist of a stretch of 12 18 deoxythymidines that anneal to poly(A) tails of eukaryotic mRNA.
context NCIP
origin
workflowStatus RELEASED
registrationStatus Application
latestVersionIndicator Yes
beginDate 2018-05-15
endDate
changeDescription
administrativeNotes
unresolvedIssues
deletedIndicator No
createdBy KNABLEJ
dateCreated 2018-05-15
modifiedBy SENTINEL
dateModified 2018-05-15
publicId 9158831
value Padlock probes capture method
valueDescription Padlock probes capture method
origin
beginDate 2018-05-15
endDate
deletedIndicator No
createdBy KNABLEJ
dateCreated 2024-04-18
modifiedBy ONEDATA
dateModified 2024-04-18
ValueMeaning
publicId 6287900
version 1
longName Padlock probes capture method
shortName 6287900
definition Circularized oligonucleotide probes
context NCIP
origin
workflowStatus RELEASED
registrationStatus Application
latestVersionIndicator Yes
beginDate 2018-05-15
endDate
changeDescription
administrativeNotes
unresolvedIssues
deletedIndicator No
createdBy KNABLEJ
dateCreated 2018-05-15
modifiedBy ONEDATA
dateModified 2018-05-15
publicId 9158832
value Size fractionation
valueDescription Size fractionation
origin
beginDate 2018-05-15
endDate
deletedIndicator No
createdBy KNABLEJ
dateCreated 2024-04-18
modifiedBy ONEDATA
dateModified 2024-04-18
ValueMeaning
publicId 6287901
version 1
longName Size fractionation
shortName 6287901
definition Physical selection of size appropriate targets
context NCIP
origin
workflowStatus RELEASED
registrationStatus Application
latestVersionIndicator Yes
beginDate 2018-05-15
endDate
changeDescription
administrativeNotes
unresolvedIssues
deletedIndicator No
createdBy KNABLEJ
dateCreated 2018-05-15
modifiedBy ONEDATA
dateModified 2018-05-15
publicId 9158833
value RACE
valueDescription Rapid Amplification of cDNA Ends
origin
beginDate 2018-05-15
endDate
deletedIndicator No
createdBy KNABLEJ
dateCreated 2024-04-18
modifiedBy ONEDATA
dateModified 2024-04-18
ValueMeaning
publicId 6287902
version 1
longName Rapid Amplification of cDNA Ends
shortName 6287902
definition Rapid amplification of cDNA ends.
context NCIP
origin
workflowStatus RELEASED
registrationStatus Application
latestVersionIndicator Yes
beginDate 2018-05-15
endDate
changeDescription
administrativeNotes
unresolvedIssues
deletedIndicator No
createdBy KNABLEJ
dateCreated 2018-05-15
modifiedBy ONEDATA
dateModified 2018-05-15
publicId 9158834
value CAGE
valueDescription Cap-analysis gene expression
origin
beginDate 2018-05-15
endDate
deletedIndicator No
createdBy KNABLEJ
dateCreated 2024-04-18
modifiedBy ONEDATA
dateModified 2024-04-18
ValueMeaning
publicId 6287903
version 1
longName Cap-analysis gene expression
shortName 6287903
definition Cap-analysis gene expression
context NCIP
origin
workflowStatus RELEASED
registrationStatus Application
latestVersionIndicator Yes
beginDate 2018-05-15
endDate
changeDescription
administrativeNotes
unresolvedIssues
deletedIndicator No
createdBy KNABLEJ
dateCreated 2018-05-15
modifiedBy ONEDATA
dateModified 2018-05-15
publicId 9158835
value MBD2 protein methyl-CpG binding domain
valueDescription MBD2 protein methyl-CpG binding domain
origin
beginDate 2018-05-15
endDate
deletedIndicator No
createdBy KNABLEJ
dateCreated 2024-04-18
modifiedBy ONEDATA
dateModified 2024-04-18
ValueMeaning
publicId 6287904
version 1
longName MBD2 protein methyl-CpG binding domain
shortName 6287904
definition Enrichment by methyl-CpG binding domain.
context NCIP
origin
workflowStatus RELEASED
registrationStatus Application
latestVersionIndicator Yes
beginDate 2018-05-15
endDate
changeDescription
administrativeNotes
unresolvedIssues
deletedIndicator No
createdBy KNABLEJ
dateCreated 2018-05-15
modifiedBy ONEDATA
dateModified 2018-05-15
publicId 9158836
value 5-methylcytidine antibody
valueDescription 5-methylcytidine antibody
origin
beginDate 2018-05-15
endDate
deletedIndicator No
createdBy KNABLEJ
dateCreated 2024-04-18
modifiedBy ONEDATA
dateModified 2024-04-18
ValueMeaning
publicId 6287905
version 1
longName 5-methylcytidine antibody
shortName 6287905
definition Selection of methylated DNA fragments using an antibody raised against 5-methylcytosine or 5-methylcytidine (m5C).
context NCIP
origin
workflowStatus RELEASED
registrationStatus Application
latestVersionIndicator Yes
beginDate 2018-05-15
endDate
changeDescription
administrativeNotes
unresolvedIssues
deletedIndicator No
createdBy KNABLEJ
dateCreated 2018-05-15
modifiedBy ONEDATA
dateModified 2018-05-15
publicId 9158837
value Restriction Digest
valueDescription Multiple Complete Digest Restriction Fragment Mapping
origin
beginDate 2018-05-15
endDate
deletedIndicator No
createdBy KNABLEJ
dateCreated 2024-04-18
modifiedBy ONEDATA
dateModified 2024-04-18
ValueMeaning
publicId 6287907
version 1
longName Multiple Complete Digest Restriction Fragment Mapping
shortName 6287907
definition A DNA mapping technique based on complete restriction enzyme digestion of a set of overlapping clones that provides highly redundant coverage of the mapping target.
context NCIP
origin
workflowStatus RELEASED
registrationStatus Application
latestVersionIndicator Yes
beginDate 2018-05-15
endDate
changeDescription
administrativeNotes
unresolvedIssues
deletedIndicator No
createdBy KNABLEJ
dateCreated 2018-05-15
modifiedBy ONEDATA
dateModified 2018-05-15
Concepts
longName Multiple Complete Digest Restriction Fragment Mapping
conceptCode C116160
definition A DNA mapping technique based on complete restriction enzyme digestion of a set of overlapping clones that provides highly redundant coverage of the mapping target.
evsSource NCI_CONCEPT_CODE
primaryIndicator Yes
displayOrder 0
publicId 9158838
value Reduced Representation
valueDescription Reduced Representation
origin
beginDate 2018-05-15
endDate
deletedIndicator No
createdBy KNABLEJ
dateCreated 2024-04-18
modifiedBy ONEDATA
dateModified 2024-04-18
ValueMeaning
publicId 6287908
version 1
longName Reduced Representation
shortName 6287908
definition Reproducible genomic subsets, often generated by restriction fragment size selection, containing a manageable number of loci to facilitate re-sampling.
context NCIP
origin
workflowStatus RELEASED
registrationStatus Application
latestVersionIndicator Yes
beginDate 2018-05-15
endDate
changeDescription
administrativeNotes
unresolvedIssues
deletedIndicator No
createdBy KNABLEJ
dateCreated 2018-05-15
modifiedBy ONEDATA
dateModified 2018-05-15
publicId 9158839
value Hybrid Selection
valueDescription Hybrid Selection
origin
beginDate 2018-05-15
endDate
deletedIndicator No
createdBy KNABLEJ
dateCreated 2024-04-18
modifiedBy ONEDATA
dateModified 2024-04-18
ValueMeaning
publicId 6287909
version 1
longName Hybrid Selection
shortName 6287909
definition Selection by hybridization in array or solution.
context NCIP
origin
workflowStatus RELEASED
registrationStatus Application
latestVersionIndicator Yes
beginDate 2018-05-15
endDate
changeDescription
administrativeNotes
unresolvedIssues
deletedIndicator No
createdBy KNABLEJ
dateCreated 2018-05-15
modifiedBy ONEDATA
dateModified 2018-05-15
publicId 9158840
value DNAse
valueDescription MNase Sequencing
origin
beginDate 2018-05-15
endDate
deletedIndicator No
createdBy KNABLEJ
dateCreated 2024-04-18
modifiedBy ONEDATA
dateModified 2024-04-18
ValueMeaning
publicId 6287911
version 1
longName MNase Sequencing
shortName 6287911
definition A molecular genetic technique where genome-wide sequencing is performed on chromosomal DNA that is resistant to treatment with micrococcal nuclease. This technique identifies nucleosomal DNA sequences.
context NCIP
origin
workflowStatus RELEASED
registrationStatus Application
latestVersionIndicator Yes
beginDate 2018-05-15
endDate
changeDescription
administrativeNotes
unresolvedIssues
deletedIndicator No
createdBy KNABLEJ
dateCreated 2018-05-15
modifiedBy ONEDATA
dateModified 2018-05-15
Concepts
longName MNase Sequencing
conceptCode C106056
definition A molecular genetic technique where genome-wide sequencing is performed on chromosomal DNA that is resistant to treatment with micrococcal nuclease. This technique identifies nucleosomal DNA sequences.
evsSource NCI_CONCEPT_CODE
primaryIndicator Yes
displayOrder 0
publicId 9158841
value Repeat fractionation
valueDescription Repeat fractionation
origin
beginDate 2018-05-15
endDate
deletedIndicator No
createdBy KNABLEJ
dateCreated 2024-04-18
modifiedBy ONEDATA
dateModified 2024-04-18
ValueMeaning
publicId 6287912
version 1
longName Repeat fractionation
shortName 6287912
definition Selection for less repetitive (and more gene rich) sequence through Cot filtration (CF) or other fractionation techniques based on DNA kinetics.
context NCIP
origin
workflowStatus RELEASED
registrationStatus Application
latestVersionIndicator Yes
beginDate 2018-05-15
endDate
changeDescription
administrativeNotes
unresolvedIssues
deletedIndicator No
createdBy KNABLEJ
dateCreated 2018-05-15
modifiedBy ONEDATA
dateModified 2018-05-15
publicId 9158842
value Unspecified
valueDescription Unspecified Sequencing Library Method
origin
beginDate 2018-05-15
endDate
deletedIndicator No
createdBy KNABLEJ
dateCreated 2024-04-18
modifiedBy ONEDATA
dateModified 2024-04-18
ValueMeaning
publicId 6287913
version 1
longName Unspecified Sequencing Library Method
shortName 6287913
definition Not stated explicitly or in detail.: A collection of double stranded DNA fragments flanked by oligonucleotide sequence adapters to enable their analysis by high-throughput sequencing.: A means, manner of procedure, or systematic course of actions that have to be performed in order to accomplish a particular goal.
context NCIP
origin
workflowStatus RELEASED
registrationStatus Application
latestVersionIndicator Yes
beginDate 2018-05-15
endDate
changeDescription
administrativeNotes
unresolvedIssues
deletedIndicator No
createdBy KNABLEJ
dateCreated 2018-05-15
modifiedBy ONEDATA
dateModified 2018-05-15
Concepts
longName Method
conceptCode C71460
definition A means, manner of procedure, or systematic course of actions that have to be performed in order to accomplish a particular goal.
evsSource NCI_CONCEPT_CODE
primaryIndicator Yes
displayOrder 0
longName Sequencing Library
conceptCode C148073
definition A collection of double stranded DNA fragments flanked by oligonucleotide sequence adapters to enable their analysis by high-throughput sequencing.
evsSource NCI_CONCEPT_CODE
primaryIndicator No
displayOrder 1
longName Unspecified
conceptCode C38046
definition Not stated explicitly or in detail.
evsSource NCI_CONCEPT_CODE
primaryIndicator No
displayOrder 2
publicId 9158843
value MSLL
valueDescription Methylation spanning linking library
origin
beginDate 2018-05-15
endDate
deletedIndicator No
createdBy KNABLEJ
dateCreated 2024-04-18
modifiedBy ONEDATA
dateModified 2024-04-18
ValueMeaning
publicId 6287868
version 1
longName Methylation spanning linking library
shortName 6287868
definition Methylation Spanning Linking Library
context NCIP
origin
workflowStatus RELEASED
registrationStatus Application
latestVersionIndicator Yes
beginDate 2018-05-15
endDate
changeDescription
administrativeNotes
unresolvedIssues
deletedIndicator No
createdBy KNABLEJ
dateCreated 2018-05-15
modifiedBy ONEDATA
dateModified 2018-05-15
publicId 9158844
value MDA
valueDescription MDA
origin
beginDate 2018-05-15
endDate
deletedIndicator No
createdBy KNABLEJ
dateCreated 2024-04-18
modifiedBy ONEDATA
dateModified 2024-04-18
ValueMeaning
publicId 6287869
version 1
longName MDA
shortName 6287869
definition Multiple displacement amplification
context NCIP
origin
workflowStatus RELEASED
registrationStatus Application
latestVersionIndicator Yes
beginDate 2018-05-15
endDate
changeDescription
administrativeNotes
unresolvedIssues
deletedIndicator No
createdBy KNABLEJ
dateCreated 2018-05-15
modifiedBy ONEDATA
dateModified 2018-05-15
publicId 9158845
value CF-T
valueDescription Cot-filtered theoretical single-copy
origin
beginDate 2018-05-15
endDate
deletedIndicator No
createdBy KNABLEJ
dateCreated 2024-04-18
modifiedBy ONEDATA
dateModified 2024-04-18
ValueMeaning
publicId 6287870
version 1
longName Cot-filtered theoretical single-copy
shortName 6287870
definition Cot-filtered theoretical single-copy genomic DNA
context NCIP
origin
workflowStatus RELEASED
registrationStatus Application
latestVersionIndicator Yes
beginDate 2018-05-15
endDate
changeDescription
administrativeNotes
unresolvedIssues
deletedIndicator No
createdBy KNABLEJ
dateCreated 2018-05-15
modifiedBy ONEDATA
dateModified 2018-05-15
publicId 9158846
value CF-H
valueDescription Cot-filtered highly repetitive
origin
beginDate 2018-05-15
endDate
deletedIndicator No
createdBy KNABLEJ
dateCreated 2024-04-18
modifiedBy ONEDATA
dateModified 2024-04-18
ValueMeaning
publicId 6287871
version 1
longName Cot-filtered highly repetitive
shortName 6287871
definition Cot-filtered highly repetitive genomic DNA
context NCIP
origin
workflowStatus RELEASED
registrationStatus Application
latestVersionIndicator Yes
beginDate 2018-05-15
endDate
changeDescription
administrativeNotes
unresolvedIssues
deletedIndicator No
createdBy KNABLEJ
dateCreated 2018-05-15
modifiedBy ONEDATA
dateModified 2018-05-15
publicId 9158847
value cDNA
valueDescription cDNA
origin
beginDate 2018-05-15
endDate
deletedIndicator No
createdBy KNABLEJ
dateCreated 2024-04-18
modifiedBy ONEDATA
dateModified 2024-04-18
ValueMeaning
publicId 2581950
version 1
longName cDNA
shortName 2581950
definition Single-stranded complementary DNA synthesized from an RNA template by the action of RNA-dependent DNA polymerase. cDNA (i.e., complementary DNA, not circular DNA, not C-DNA) is used in a variety of molecular cloning experiments as well as serving as a specific hybridization probe.
context NCIP
origin
workflowStatus RELEASED
registrationStatus Application
latestVersionIndicator Yes
beginDate 2006-11-15
endDate
changeDescription
administrativeNotes
unresolvedIssues
deletedIndicator No
createdBy CURTIST
dateCreated 2006-11-15
modifiedBy ZHWENDY
dateModified 2025-06-02
Concepts
longName cDNA
conceptCode C324
definition Single-stranded DNA that is complementary to messenger RNA or DNA that has been synthesized from messenger RNA by reverse transcriptase.
evsSource NCI_CONCEPT_CODE
primaryIndicator Yes
displayOrder 0
Designations
languageName ENGLISH
name Erythema simplex
type FHIR US CORE Name
context CDMH
id 369E0107-F147-5C25-E063-731AD00A78E4
createdBy Xiaoyun Zhang
dateCreated 2025-06-02
modifiedBy ZHWENDY
dateModified 2025-06-02
publicId 9158848
value Other
valueDescription Other Sequencing Library Method
origin
beginDate 2018-05-15
endDate
deletedIndicator No
createdBy KNABLEJ
dateCreated 2024-04-18
modifiedBy ONEDATA
dateModified 2024-04-18
ValueMeaning
publicId 6287874
version 1
longName Other Sequencing Library Method
shortName 6287874
definition Different than the one(s) previously specified or mentioned.: A collection of double stranded DNA fragments flanked by oligonucleotide sequence adapters to enable their analysis by high-throughput sequencing.: A means, manner of procedure, or systematic course of actions that have to be performed in order to accomplish a particular goal.
context NCIP
origin
workflowStatus RELEASED
registrationStatus Application
latestVersionIndicator Yes
beginDate 2018-05-15
endDate
changeDescription
administrativeNotes
unresolvedIssues
deletedIndicator No
createdBy KNABLEJ
dateCreated 2018-05-15
modifiedBy ONEDATA
dateModified 2018-05-15
Concepts
longName Method
conceptCode C71460
definition A means, manner of procedure, or systematic course of actions that have to be performed in order to accomplish a particular goal.
evsSource NCI_CONCEPT_CODE
primaryIndicator Yes
displayOrder 0
longName Sequencing Library
conceptCode C148073
definition A collection of double stranded DNA fragments flanked by oligonucleotide sequence adapters to enable their analysis by high-throughput sequencing.
evsSource NCI_CONCEPT_CODE
primaryIndicator No
displayOrder 1
longName Other
conceptCode C17649
definition Different than the one(s) previously specified or mentioned.
evsSource NCI_CONCEPT_CODE
primaryIndicator No
displayOrder 2
publicId 9158849
value miRNA Size Fractionation
valueDescription miRNA Size Fractionated Genomic Library
origin
beginDate 2020-12-22
endDate
deletedIndicator No
createdBy KNABLEJ
dateCreated 2024-04-18
modifiedBy ONEDATA
dateModified 2024-04-18
ValueMeaning
publicId 7537067
version 1
longName miRNA Size Fractionated Genomic Library
shortName 7537067
definition A RNA library that has been fractionated by size exclusion methods to enrich for microRNAs.
context NCIP
origin
workflowStatus RELEASED
registrationStatus Application
latestVersionIndicator Yes
beginDate 2020-12-22
endDate
changeDescription
administrativeNotes
unresolvedIssues
deletedIndicator No
createdBy KNABLEJ
dateCreated 2020-12-22
modifiedBy ONEDATA
dateModified 2020-12-22
Concepts
longName miRNA Size Fractionated Genomic Library
conceptCode C163991
definition A RNA library that has been fractionated by size exclusion methods to enrich for microRNAs.
evsSource NCI_CONCEPT_CODE
primaryIndicator Yes
displayOrder 0
publicId 9158850
value rRNA Depletion
valueDescription rRNA Depleted Genomic Library
origin
beginDate 2020-12-22
endDate
deletedIndicator No
createdBy KNABLEJ
dateCreated 2024-04-18
modifiedBy ONEDATA
dateModified 2024-04-18
ValueMeaning
publicId 7537069
version 1
longName rRNA Depleted Genomic Library
shortName 7537069
definition A genomic library where the sample has been subjected to a ribosomal RNA depletion step before it is amplified.
context NCIP
origin
workflowStatus RELEASED
registrationStatus Application
latestVersionIndicator Yes
beginDate 2020-12-22
endDate
changeDescription
administrativeNotes
unresolvedIssues
deletedIndicator No
createdBy KNABLEJ
dateCreated 2020-12-22
modifiedBy ONEDATA
dateModified 2020-12-22
Concepts
longName rRNA Depleted Genomic Library
conceptCode C163990
definition A genomic library where the sample has been subjected to a ribosomal RNA depletion step before it is amplified.
evsSource NCI_CONCEPT_CODE
primaryIndicator Yes
displayOrder 0
publicId 9158852
value Affinity Enrichment
valueDescription Affinity Enrichment
origin
beginDate 2021-03-16
endDate
deletedIndicator No
createdBy KNABLEJ
dateCreated 2024-04-18
modifiedBy ONEDATA
dateModified 2024-04-18
ValueMeaning
publicId 7601843
version 1
longName Affinity Enrichment
shortName 7601843
definition The strength of noncovalent chemical binding between two substances as measured by the dissociation constant of the complex.: Any of various techniques designed to select or increase a target item in a mixed sample.
context NCIP
origin
workflowStatus RELEASED
registrationStatus Application
latestVersionIndicator Yes
beginDate 2021-03-16
endDate
changeDescription
administrativeNotes
unresolvedIssues
deletedIndicator No
createdBy KNABLEJ
dateCreated 2021-03-16
modifiedBy ONEDATA
dateModified 2021-03-16
Concepts
longName Enrichment
conceptCode C154307
definition Any of various techniques designed to select or increase a target item in a mixed sample.
evsSource NCI_CONCEPT_CODE
primaryIndicator Yes
displayOrder 0
longName Affinity
conceptCode C20604
definition The strength of noncovalent chemical binding between two substances as measured by the dissociation constant of the complex.
evsSource NCI_CONCEPT_CODE
primaryIndicator No
displayOrder 1
publicId 9158853
value Not applicable
valueDescription Not Applicable
origin
beginDate 2021-03-31
endDate
deletedIndicator No
createdBy KNABLEJ
dateCreated 2024-04-18
modifiedBy ONEDATA
dateModified 2024-04-18
ValueMeaning
publicId 5682946
version 1
longName Not Applicable
shortName 5682946v1.00
definition Determination of a value is not relevant in the current context.
context NCIP
origin
workflowStatus RELEASED
registrationStatus Application
latestVersionIndicator Yes
beginDate 2017-02-27
endDate
changeDescription
administrativeNotes 4/24/25 Added Alt Name. sl 2023.8.15 Alt VM added per ticket request CADSR0002731. ak
unresolvedIssues
deletedIndicator No
createdBy ALEYR
dateCreated 2017-02-27
modifiedBy SLAUER
dateModified 2025-04-25
Concepts
longName Not Applicable
conceptCode C48660
definition Determination of a value is not relevant in the current context.
evsSource NCI_CONCEPT_CODE
primaryIndicator Yes
displayOrder 0
Designations
languageName ENGLISH
name Not applicable, I have no other children
type VM Alt Name
context COG
id DDCD79A4-89F4-3225-E053-4EBD850A71DC
createdBy Angela Kummerow
dateCreated 2022-04-29
modifiedBy ONEDATA
dateModified 2022-04-29
languageName ENGLISH
name Not applicable, I don't pay for rent or mortgage
type VM Alt Name
context COG
id DE345AFA-AD89-5D75-E053-731AD00AC2B1
createdBy Angela Kummerow
dateCreated 2022-05-05
modifiedBy KUMMEROA
dateModified 2022-05-05
languageName ENGLISH
name N/A
type Manually-curated
context NCIP
id E55A7E15-972E-7D92-E053-731AD00A7DF8
createdBy Mounika Maddineni
dateCreated 2022-08-03
modifiedBy MMADDINENI
dateModified 2022-08-03
languageName ENGLISH
name Not Applicable (not consented to Amendment 9 or later)
type VM Alt Name
context COG
id EDFFA71B-6D66-2183-E053-731AD00AD9AA
createdBy Angela Kummerow
dateCreated 2022-11-21
modifiedBy KUMMEROA
dateModified 2022-11-21
languageName ENGLISH
name Not applicable, no non-targeted lesion
type VM Alt Name
context COG
id 02F6CFAB-6C93-4A58-E063-731AD00A7798
createdBy Angela Kummerow
dateCreated 2023-08-15
modifiedBy KUMMEROA
dateModified 2023-08-15
languageName ENGLISH
name Not applicable
type VM Alt Name
context COG
id 0A347E82-FDD3-74DB-E063-731AD00AAC1B
createdBy Mounika Maddineni
dateCreated 2023-11-15
modifiedBy MMADDINENI
dateModified 2023-11-15
languageName ENGLISH
name Not applicable, baseline evaluation
type COG Form Element
context COG
id 0FB7C78B-7D3A-0187-E063-731AD00A8625
createdBy Mounika Maddineni
dateCreated 2024-01-24
modifiedBy MMADDINENI
dateModified 2024-01-24
languageName ENGLISH
name Not required
type VM Alt Name
context COG
id 11D80A12-E9C1-397C-E063-731AD00A1B2F
createdBy Mounika Maddineni
dateCreated 2024-02-20
modifiedBy MMADDINENI
dateModified 2024-02-20
languageName ENGLISH
name Not applicable, baseline
type VM Alt Name
context COG
id 12863BC5-8F4C-2FF9-E063-731AD00A2828
createdBy Angela Kummerow
dateCreated 2024-02-29
modifiedBy KUMMEROA
dateModified 2024-02-29
languageName ENGLISH
name Not applicable, I do not have to pay rent or mortgage
type VM Alt Name
context CCTG
id 20D67CDE-F8D5-5243-E063-731AD00A87BB
createdBy Cassandra Lohnes
dateCreated 2024-08-29
modifiedBy CLOHNES
dateModified 2024-08-29
languageName ENGLISH
name Not applicable, I did not have to pay utility bills in the past 12 months or utilities already included in rent
type VM Alt Name
context CCTG
id 20D6F7BC-16A2-7050-E063-731AD00A7C12
createdBy Cassandra Lohnes
dateCreated 2024-08-29
modifiedBy CLOHNES
dateModified 2024-08-29
languageName ENGLISH
name Not applicable, I do not have to pay for my basic needs
type VM Alt Name
context CCTG
id 20D8AE9B-01E1-4C94-E063-731AD00AB7BD
createdBy Cassandra Lohnes
dateCreated 2024-08-29
modifiedBy CLOHNES
dateModified 2024-08-29
languageName ENGLISH
name Not applicable, I did not have to get any medicine or medical supplies in the past 12 months
type VM Alt Name
context CCTG
id 20E6B794-E2FB-4447-E063-731AD00A383E
createdBy Cassandra Lohnes
dateCreated 2024-08-30
modifiedBy CLOHNES
dateModified 2024-08-30
languageName ENGLISH
name NA
type VM Alt Name
context DCP
id 338DB0B2-D575-0CC9-E063-731AD00A2CC8
createdBy Sarah Lauer
dateCreated 2025-04-24
modifiedBy SLAUER
dateModified 2025-04-25
publicId 9158854
value MNase
valueDescription
origin
beginDate 2023-05-08
endDate
deletedIndicator No
createdBy COLBERTM
dateCreated 2024-04-18
modifiedBy COLBERTM
dateModified 2024-04-18
ValueMeaning
publicId 6287911
version 1
longName MNase Sequencing
shortName 6287911
definition A molecular genetic technique where genome-wide sequencing is performed on chromosomal DNA that is resistant to treatment with micrococcal nuclease. This technique identifies nucleosomal DNA sequences.
context NCIP
origin
workflowStatus RELEASED
registrationStatus Application
latestVersionIndicator Yes
beginDate 2018-05-15
endDate
changeDescription
administrativeNotes
unresolvedIssues
deletedIndicator No
createdBy KNABLEJ
dateCreated 2018-05-15
modifiedBy ONEDATA
dateModified 2018-05-15
Concepts
longName MNase Sequencing
conceptCode C106056
definition A molecular genetic technique where genome-wide sequencing is performed on chromosomal DNA that is resistant to treatment with micrococcal nuclease. This technique identifies nucleosomal DNA sequences.
evsSource NCI_CONCEPT_CODE
primaryIndicator Yes
displayOrder 0
publicId 9159334
value Poly-A Enriched Genomic Library
valueDescription
origin
beginDate 2024-04-18
endDate
deletedIndicator No
createdBy COLBERTM
dateCreated 2024-04-18
modifiedBy COLBERTM
dateModified 2024-04-18
ValueMeaning
publicId 14901531
version 1
longName Poly-A Enriched Genomic Library
shortName 14901531v1.00
definition A genomic library where the sample has been subjected to enrichment via binding to immobilized poly-T oligonucleotides, which will preferentially isolate polyadenylated (poly-A) RNAs.
context NCIP
origin
workflowStatus RELEASED
registrationStatus Application
latestVersionIndicator Yes
beginDate 2024-04-18
endDate
changeDescription
administrativeNotes
unresolvedIssues
deletedIndicator No
createdBy COLBERTM
dateCreated 2024-04-18
modifiedBy COLBERTM
dateModified 2024-04-18
Concepts
longName Poly-A Enriched Genomic Library
conceptCode C163988
definition A genomic library where the sample has been subjected to enrichment via binding to immobilized poly-T oligonucleotides, which will preferentially isolate polyadenylated (poly-A) RNAs.
evsSource NCI_CONCEPT_CODE
primaryIndicator Yes
displayOrder 0
Designations
languageName ENGLISH
name PolyA
type CCDI Alt Name
context Pediatric Cancer
id 16664BE7-2515-2825-E063-731AD00A277B
createdBy Maureen Ryan
dateCreated 2024-04-18
modifiedBy COLBERTM
dateModified 2024-04-18
languageName ENGLISH
name PolyA Selection
type CCDI Alt Name
context Pediatric Cancer
id 16664BE7-2516-2825-E063-731AD00A277B
createdBy Maureen Ryan
dateCreated 2024-04-18
modifiedBy COLBERTM
dateModified 2024-04-18
ConceptualDomain
publicId 2435028
version 1
longName Gene Product
shortName C26548
definition A protein or RNA whose structure is represented in and determined by genomic sequences.
context NCIP
origin NCI Thesaurus
workflowStatus RELEASED
registrationStatus Application
latestVersionIndicator Yes
beginDate 2005-12-06
endDate
changeDescription
administrativeNotes
unresolvedIssues
deletedIndicator No
createdBy CURTIST
dateCreated 2005-12-06
modifiedBy SBR
dateModified 2006-12-20
RepresentationTerm
publicId 6287014
version 1
longName Sequencing Library Method Type
shortName C148073:C71460:C25284
definition A collection of double stranded DNA fragments flanked by oligonucleotide sequence adapters to enable their analysis by high-throughput sequencing.:A means, manner of procedure, or systematic course of actions that have to be performed in order to accomplish a particular goal.:Something distinguishable as an identifiable class based on common qualities.
context NCIP
origin
workflowStatus RELEASED
registrationStatus Application
latestVersionIndicator Yes
beginDate 2018-05-15
endDate
changeDescription
administrativeNotes
unresolvedIssues
deletedIndicator No
createdBy KNABLEJ
dateCreated 2018-05-15
modifiedBy ONEDATA
dateModified 2018-05-15
Concepts
longName Sequencing Library
conceptCode C148073
definition A collection of double stranded DNA fragments flanked by oligonucleotide sequence adapters to enable their analysis by high-throughput sequencing.
evsSource NCI_CONCEPT_CODE
primaryIndicator No
displayOrder 2
longName Method
conceptCode C71460
definition A means, manner of procedure, or systematic course of actions that have to be performed in order to accomplish a particular goal.
evsSource NCI_CONCEPT_CODE
primaryIndicator No
displayOrder 1
longName Type
conceptCode C25284
definition Something distinguishable as an identifiable class based on common qualities.
evsSource NCI_CONCEPT_CODE
primaryIndicator Yes
displayOrder 0
ClassificationSchemes
publicId 5506117
version 1
longName Genomics
context MCL
workflowStatus RELEASED
registrationStatus Application
ClassificationSchemeItems
publicId 7318156
version 1
longName MCL Core Genomics
context MCL
workflowStatus RELEASED
registrationStatus Application
publicId 8064110
version 1
longName GC (General Commons)
context CRDC
workflowStatus RELEASED
registrationStatus Application
ClassificationSchemeItems
publicId 12177495
version 1
longName Sequencing
context CRDC
workflowStatus RELEASED
registrationStatus Application
publicId 10429357
version 1
longName GDC (Genomic Data Commons)
context CRDC
workflowStatus DRAFT NEW
registrationStatus Application
ClassificationSchemeItems
publicId 14506028
version 1
longName Candidate New GDC CDEs
context CRDC
workflowStatus DRAFT NEW
registrationStatus Application
publicId 13574489
version 1
longName CCDI (Childhood Cancer Data Initiative)
context Pediatric Cancer
workflowStatus RELEASED
registrationStatus Application
ClassificationSchemeItems
publicId 13594094
version 1
longName Sequencing
context Pediatric Cancer
workflowStatus RELEASED
registrationStatus Application
publicId 13594223
version 1
longName Sequencing File
context Pediatric Cancer
workflowStatus RELEASED
registrationStatus Application
publicId 13594225
version 1
longName Single Cell Sequencing File
context Pediatric Cancer
workflowStatus RELEASED
registrationStatus Application
publicId 14733231
version 1
longName CCDI Federation CDEs
context Pediatric Cancer
workflowStatus RELEASED
registrationStatus Application
ClassificationSchemeItems
publicId 14735767
version 1
longName Molecular
context Pediatric Cancer
workflowStatus RELEASED
registrationStatus Application
AlternateNames
name CRDC
type USED_BY
context CRDC
name library_selection
type GC Alt Name
context CRDC
name library_selection
type MCL Alt Name
context MCL
name library_selection
type CCDI Alt Name
context Pediatric Cancer
name Library Selection Method
type CCDI-Fed Alt Name
context Pediatric Cancer
name sequencing_file
type CCDI Table
context Pediatric Cancer
name library_selection
type GDC Alt Name
context GDC
ReferenceDocuments
documentName PQT
documentText Library selection method
documentType Preferred Question Text
url
context MCL
documentName MCL-1
documentText Library Selection Method
documentType Alternate Question Text
url
context MCL
documentName MCL-Template Name
documentText mcl_genomics_v0-1_20210126
documentType Data Collection Template
url https://mcl.nci.nih.gov/resources/standards/mcl-cdes
context MCL
documentName CDS
documentText Affinity Enrichment; PCR
documentType EXAMPLE
url
context CRDC
documentName CCDI-Fed
documentText For Library Selection Method use these permissible values: • Hybrid Selection • Not applicable • PCR • Poly-A Enriched Genomic Library • Random • rRNA Depletion • Unspecified
documentType Coding Instructions
url
context Pediatric Cancer
apiResponse
type S