DataElement
publicId 15235981
version 1
longName Specimen Molecule Source
shortName 15235980v1.00:14808230v2.00
definition The molecular component, such as carbohydrate, protein, lipid, or nucleic acid, that has been prepared for testing or research purposes.
context Pediatric Cancer
origin CCDI:Childhood Cancer Data Initiative
workflowStatus DRAFT NEW
registrationStatus Application
latestVersionIndicator Yes
beginDate 2024-10-29
endDate
changeDescription
administrativeNotes 2/21/25 Updated OC to Specimen (syn C70699) to align with Code Map recommended OCs. sl; 10/30/25 Edited definition. mr; 10/29/24 Created to supercede CDE 14808232 Sequencing Library Molecule Source to include areas other than sequencing i.e. proteomics, etc. mr;
unresolvedIssues
deletedIndicator No
createdBy COLBERTM
dateCreated 2024-10-29
modifiedBy SLAUER
dateModified 2025-02-21
DataElementConcept
publicId 15235980
version 1
longName Specimen Molecule
shortName 2859635v1.00:5027812v1.00
definition Any material sample taken from a biological entity for testing, diagnostic, propagation, treatment or research purposes, including a sample obtained from a living organism or taken from the biological object after halting of all its life functions. Biospecimen can contain one or more components including but not limited to cellular molecules, cells, tissues, organs, body fluids, embryos, and body excretory products.:An aggregate of two or more atoms in a defined arrangement held together by chemical bonds.
context Pediatric Cancer
origin CCDI:Childhood Cancer Data Initiative
workflowStatus DRAFT NEW
registrationStatus Application
latestVersionIndicator Yes
beginDate 2024-10-29
endDate
changeDescription
administrativeNotes 2/21/25 Updated OC to Specimen (syn C70699) to align with Code Map recommended OCs. sl; 10/29/24 Created to supercede CDE 14808232 Sequencing Library Molecule Source to include areas other than sequencing i.e. proteomics, etc. mr;
unresolvedIssues
deletedIndicator No
createdBy COLBERTM
dateCreated 2024-10-29
modifiedBy SLAUER
dateModified 2025-02-21
ObjectClass
publicId 2859635
version 1
longName Biospecimen
shortName C70699
definition Any material sample taken from a biological entity for testing, diagnostic, propagation, treatment or research purposes, including a sample obtained from a living organism or taken from the biological object after halting of all its life functions. Biospecimen can contain one or more components including but not limited to cellular molecules, cells, tissues, organs, body fluids, embryos, and body excretory products.
context NCIP
origin NCI Thesaurus
workflowStatus RELEASED
registrationStatus Application
latestVersionIndicator Yes
beginDate 2009-04-01
endDate
changeDescription
administrativeNotes
unresolvedIssues
deletedIndicator No
createdBy UMLLOADER_TAVERNA
dateCreated 2009-04-01
modifiedBy ONEDATA
dateModified 2009-04-01
Concepts
longName Biospecimen
conceptCode C70699
definition Any material sample taken from a biological entity for testing, diagnostic, propagation, treatment or research purposes, including a sample obtained from a living organism or taken from the biological object after halting of all its life functions. Biospecimen can contain one or more components including but not limited to cellular molecules, cells, tissues, organs, body fluids, embryos, and body excretory products.
evsSource NCI_CONCEPT_CODE
primaryIndicator Yes
displayOrder 0
Property
publicId 5027812
version 1
longName Molecule
shortName C63816
definition An aggregate of two or more atoms in a defined arrangement held together by chemical bonds.
context NCIP
origin NCI Thesaurus
workflowStatus RELEASED
registrationStatus Application
latestVersionIndicator Yes
beginDate 2015-10-03
endDate
changeDescription
administrativeNotes
unresolvedIssues
deletedIndicator No
createdBy BRADLAUR
dateCreated 2015-10-03
modifiedBy ONEDATA
dateModified 2015-10-03
Concepts
longName Molecule
conceptCode C63816
definition An aggregate of two or more atoms in a defined arrangement held together by chemical bonds.
evsSource NCI_CONCEPT_CODE
primaryIndicator Yes
displayOrder 0
ConceptualDomain
publicId 2435018
version 1
longName Clinical or Research Activity
shortName C16203
definition Any specific activity undertaken during the course of a clinical study or research protocol.
context NCIP
origin NCI Thesaurus
workflowStatus RELEASED
registrationStatus Application
latestVersionIndicator Yes
beginDate 2005-12-06
endDate
changeDescription
administrativeNotes
unresolvedIssues
deletedIndicator No
createdBy CURTIST
dateCreated 2005-12-06
modifiedBy SBR
dateModified 2006-12-20
ValueDomain
publicId 14808230
version 2
longName Molecule Source
shortName 14808230v2.00
definition An aggregate of two or more atoms in a defined arrangement held together by chemical bonds._Where something is available or from where it originates.
context Pediatric Cancer
type Enumerated
dataType CHARACTER
minLength
maxLength 100
minValue
maxValue
decimalPlace
origin CCDI:Childhood Cancer Data Initiative
workflowStatus DRAFT MOD
registrationStatus Application
latestVersionIndicator Yes
beginDate 2024-02-28
endDate
changeDescription
administrativeNotes 8/7/24 Versioned to 2.0 in order to replace PV Transcriptomics with Transcriptome. Leaving as Draft Mod for now due to upcoming changes in PVs. mr; 7/31/24 Released per Federation/Pat D consensus. mr; 7/31/24 Changed PV back to Genomic DNA per CCDI-Fed Friday meeting 7/26/24 (Pat D, Federation people, and approval of Amanda B of CDS via email). mr; 3/21/2024 Deleted Small Viral DNA PV and added Viral DNA instead per CCDI and SRA; Changed Genomic DNA to Genomic to match SRA. mr; 3/8/24 removed "Transcriptomic Single Cell" as PV per 3/8/24 CCDI-Federation call. PV is a hybrid of material and molecule. jk; 2/28/24 Created per PCDC and Ped Core. mr
unresolvedIssues
deletedIndicator No
createdBy COLBERTM
dateCreated 2024-08-07
modifiedBy COLBERTM
dateModified 2024-08-07
PermissibleValues
publicId 9170843
value Viral RNA
valueDescription
origin
beginDate 2024-03-21
endDate
deletedIndicator No
createdBy COLBERTM
dateCreated 2024-08-07
modifiedBy COLBERTM
dateModified 2024-08-07
ValueMeaning
publicId 14852655
version 1
longName Viral RNA
shortName 14852655v1.00
definition The RNA that originates from a virus.
context NCIP
origin
workflowStatus RELEASED
registrationStatus Application
latestVersionIndicator Yes
beginDate 2024-03-21
endDate
changeDescription
administrativeNotes
unresolvedIssues
deletedIndicator No
createdBy COLBERTM
dateCreated 2024-03-21
modifiedBy ONEDATA_WA
dateModified 2025-02-03
Concepts
longName Viral RNA
conceptCode C204811
definition The RNA that originates from a virus.
evsSource NCI_CONCEPT_CODE
primaryIndicator Yes
displayOrder 0
Designations
languageName ENGLISH
name Virus RNA
type Biomarker Synonym
context NCIP
id 2D3E61E9-ECA6-4CF5-E063-731AD00AFCD7
createdBy Load Job Administrator
dateCreated 2025-02-03
modifiedBy ONEDATA_WA
dateModified 2025-02-03
publicId 9170844
value Genomic DNA
valueDescription
origin
beginDate 2024-02-28
endDate
deletedIndicator No
createdBy COLBERTM
dateCreated 2024-08-07
modifiedBy COLBERTM
dateModified 2024-08-07
ValueMeaning
publicId 6273408
version 1
longName Genomic DNA
shortName 6273408
definition The DNA that is part of the normal chromosomal complement of an organism.
context NCIP
origin
workflowStatus RELEASED
registrationStatus Application
latestVersionIndicator Yes
beginDate 2018-05-11
endDate
changeDescription
administrativeNotes
unresolvedIssues
deletedIndicator No
createdBy KNABLEJ
dateCreated 2018-05-11
modifiedBy COLBERTM
dateModified 2024-03-21
Concepts
longName Genomic DNA
conceptCode C95940
definition The DNA that is part of the normal chromosomal complement of an organism.
evsSource NCI_CONCEPT_CODE
primaryIndicator Yes
displayOrder 0
Designations
languageName ENGLISH
name Genomic
type CCDI Alt Name
context Pediatric Cancer
id 086730C0-9FF7-18F9-E063-731AD00A1E36
createdBy Maureen Ryan
dateCreated 2023-10-23
modifiedBy COLBERTM
dateModified 2023-10-23
languageName ENGLISH
name DNA
type CCDI Alt Name
context Pediatric Cancer
id 086730C0-9FF8-18F9-E063-731AD00A1E36
createdBy Maureen Ryan
dateCreated 2023-10-23
modifiedBy COLBERTM
dateModified 2023-10-23
publicId 9170845
value Metagenomic
valueDescription
origin
beginDate 2024-02-28
endDate
deletedIndicator No
createdBy COLBERTM
dateCreated 2024-08-07
modifiedBy COLBERTM
dateModified 2024-08-07
ValueMeaning
publicId 14809191
version 1
longName Metagenomic
shortName 14809191v1.00
definition Derived from or associated with material collected from an environmental sample.
context NCIP
origin
workflowStatus RELEASED
registrationStatus Application
latestVersionIndicator Yes
beginDate 2024-02-28
endDate
changeDescription
administrativeNotes
unresolvedIssues
deletedIndicator No
createdBy COLBERTM
dateCreated 2024-02-28
modifiedBy COLBERTM
dateModified 2024-03-21
Concepts
longName Metagenomic
conceptCode C201925
definition Derived from or associated with material collected from an environmental sample.
evsSource NCI_CONCEPT_CODE
primaryIndicator Yes
displayOrder 0
publicId 9170846
value Metatranscriptomic
valueDescription
origin
beginDate 2024-02-28
endDate
deletedIndicator No
createdBy COLBERTM
dateCreated 2024-08-07
modifiedBy COLBERTM
dateModified 2024-08-07
ValueMeaning
publicId 14809192
version 1
longName Metatranscriptomic
shortName 14809192v1.00
definition Derived from or associated with transcripts from an environmental sample.
context NCIP
origin
workflowStatus RELEASED
registrationStatus Application
latestVersionIndicator Yes
beginDate 2024-02-28
endDate
changeDescription
administrativeNotes
unresolvedIssues
deletedIndicator No
createdBy COLBERTM
dateCreated 2024-02-28
modifiedBy COLBERTM
dateModified 2024-03-21
Concepts
longName Metatranscriptomic
conceptCode C201926
definition Derived from or associated with transcripts from an environmental sample.
evsSource NCI_CONCEPT_CODE
primaryIndicator Yes
displayOrder 0
publicId 9170848
value Not Reported
valueDescription
origin
beginDate 2024-03-01
endDate
deletedIndicator No
createdBy COLBERTM
dateCreated 2024-08-07
modifiedBy COLBERTM
dateModified 2024-08-07
ValueMeaning
publicId 5612322
version 1
longName Not Reported
shortName 5612322v1.00
definition Not provided or available.
context NCIP
origin
workflowStatus RELEASED
registrationStatus Application
latestVersionIndicator Yes
beginDate 2017-01-03
endDate
changeDescription
administrativeNotes 3/4/25 Added alt VM names per RFC 26 CR 1. sl; 10/10/23 changed Long Name from "Not Stated" to match NCIt Preferred name and current caDSR concept Long Name of "Not Reported" per Brenda.Janice . LS
unresolvedIssues
deletedIndicator No
createdBy ALEYR
dateCreated 2017-01-03
modifiedBy SLAUER
dateModified 2025-03-04
Concepts
longName Not Reported
conceptCode C43234
definition Not provided or available.
evsSource NCI_CONCEPT_CODE
primaryIndicator Yes
displayOrder 0
Designations
languageName ENGLISH
name Not reported
type VM Alt Name
context COG
id EDAF8130-FB17-4970-E053-731AD00A3E2F
createdBy Angela Kummerow
dateCreated 2022-11-17
modifiedBy KUMMEROA
dateModified 2022-11-17
languageName ENGLISH
name Not reported
type PCDC Alt Name
context Pediatric Cancer
id F70C841B-1BAB-3136-E053-731AD00AEC0A
createdBy Maureen Ryan
dateCreated 2023-03-16
modifiedBy COLBERTM
dateModified 2023-03-16
languageName ENGLISH
name Not Reported
type VM Alt Name
context COG
id F7E64D3D-671D-5F5B-E053-731AD00A7EA8
createdBy Angela Kummerow
dateCreated 2023-03-27
modifiedBy KUMMEROA
dateModified 2023-03-27
languageName ENGLISH
name Not reported
type Manually-curated
context NCIP
id 01E36070-B407-2894-E063-731AD00A26B9
createdBy Gwen Deen
dateCreated 2023-08-01
modifiedBy GDEEN
dateModified 2023-08-01
languageName ENGLISH
name Not Stated
type VM Alt Name
context NCIP
id 075F5912-5BB3-3B40-E063-731AD00A37FA
createdBy Lamia Sokker
dateCreated 2023-10-10
modifiedBy SOKKERL
dateModified 2023-10-10
languageName ENGLISH
name Not stated in Report
type VM Alt Name
context CCTG
id 097FC64F-5B06-6592-E063-731AD00AC610
createdBy Cassandra Lohnes
dateCreated 2023-11-06
modifiedBy CLOHNES
dateModified 2023-11-06
languageName ENGLISH
name Not Stated in Report
type OID, CCTG
context CCTG
id 09A6371C-80E0-502C-E063-731AD00A26F5
createdBy Cassandra Lohnes
dateCreated 2023-11-08
modifiedBy CLOHNES
dateModified 2023-11-08
languageName ENGLISH
name Not Reported
type CRDC Alt Name
context CRDC
id 0F53F53A-F7B0-4F25-E063-731AD00A3B14
createdBy Bobbie Fincham
dateCreated 2024-01-19
modifiedBy FINCHAMB
dateModified 2024-01-19
languageName ENGLISH
name -1
type TCIA Alt Name
context CIP
id 1F44C19A-94C2-5731-E063-731AD00AF175
createdBy Bobbie Fincham
dateCreated 2024-08-09
modifiedBy FINCHAMB
dateModified 2024-08-09
languageName ENGLISH
name Not Reported
type CDA Alt Name
context CRDC
id 2F8F12E0-3D58-33DC-E063-731AD00A3A1C
createdBy Sarah Lauer
dateCreated 2025-03-04
modifiedBy SLAUER
dateModified 2025-03-04
languageName ENGLISH
name not reported
type CDA Alt Name
context CRDC
id 2F8F12E0-3D59-33DC-E063-731AD00A3A1C
createdBy Sarah Lauer
dateCreated 2025-03-04
modifiedBy SLAUER
dateModified 2025-03-04
languageName ENGLISH
name Not Reported
type GC Alt Name
context CRDC
id 2F8F12E0-3D5A-33DC-E063-731AD00A3A1C
createdBy Sarah Lauer
dateCreated 2025-03-04
modifiedBy SLAUER
dateModified 2025-03-04
languageName ENGLISH
name Not Reported
type GDC Alt Name
context CRDC
id 2F8F12E0-3D5B-33DC-E063-731AD00A3A1C
createdBy Sarah Lauer
dateCreated 2025-03-04
modifiedBy SLAUER
dateModified 2025-03-04
languageName ENGLISH
name Not Reported
type PDC Alt Name
context CRDC
id 2F8F12E0-3D5C-33DC-E063-731AD00A3A1C
createdBy Sarah Lauer
dateCreated 2025-03-04
modifiedBy SLAUER
dateModified 2025-03-04
languageName ENGLISH
name Not Reported
type HTAN Alt Name
context HTAN
id 2F8F12E0-3D5D-33DC-E063-731AD00A3A1C
createdBy Sarah Lauer
dateCreated 2025-03-04
modifiedBy SLAUER
dateModified 2025-03-04
publicId 9170849
value Transcriptome
valueDescription
origin
beginDate 2024-08-07
endDate
deletedIndicator No
createdBy COLBERTM
dateCreated 2024-08-07
modifiedBy COLBERTM
dateModified 2024-08-07
ValueMeaning
publicId 15024811
version 1
longName Transcriptome
shortName 15024811v1.00
definition The complete set of RNA transcripts that are produced by the genome, under specific circumstances or in a specific cell.
context NCIP
origin
workflowStatus RELEASED
registrationStatus Application
latestVersionIndicator Yes
beginDate 2024-08-07
endDate
changeDescription
administrativeNotes
unresolvedIssues
deletedIndicator No
createdBy COLBERTM
dateCreated 2024-08-07
modifiedBy COLBERTM
dateModified 2024-08-07
Concepts
longName Transcriptome
conceptCode C153194
definition The complete set of RNA transcripts that are produced by the genome, under specific circumstances or in a specific cell.
evsSource NCI_CONCEPT_CODE
primaryIndicator Yes
displayOrder 0
ConceptualDomain
publicId 2435018
version 1
longName Clinical or Research Activity
shortName C16203
definition Any specific activity undertaken during the course of a clinical study or research protocol.
context NCIP
origin NCI Thesaurus
workflowStatus RELEASED
registrationStatus Application
latestVersionIndicator Yes
beginDate 2005-12-06
endDate
changeDescription
administrativeNotes
unresolvedIssues
deletedIndicator No
createdBy CURTIST
dateCreated 2005-12-06
modifiedBy SBR
dateModified 2006-12-20
RepresentationTerm
publicId 14808229
version 1
longName Molecule Source
shortName 14808229v1.00
definition An aggregate of two or more atoms in a defined arrangement held together by chemical bonds._Where something is available or from where it originates.
context NCIP
origin
workflowStatus RELEASED
registrationStatus Application
latestVersionIndicator Yes
beginDate 2024-02-28
endDate
changeDescription
administrativeNotes
unresolvedIssues
deletedIndicator No
createdBy COLBERTM
dateCreated 2024-02-28
modifiedBy COLBERTM
dateModified 2024-02-28
Concepts
longName Molecule
conceptCode C63816
definition An aggregate of two or more atoms in a defined arrangement held together by chemical bonds.
evsSource NCI_CONCEPT_CODE
primaryIndicator No
displayOrder 1
longName Source
conceptCode C25683
definition Where something is available or from where it originates.
evsSource NCI_CONCEPT_CODE
primaryIndicator Yes
displayOrder 0
ClassificationSchemes
publicId 8064110
version 1
longName GC (General Commons)
context CRDC
workflowStatus RELEASED
registrationStatus Application
ClassificationSchemeItems
publicId 12177495
version 1
longName Sequencing
context CRDC
workflowStatus RELEASED
registrationStatus Application
publicId 13574489
version 1
longName CCDI (Childhood Cancer Data Initiative)
context Pediatric Cancer
workflowStatus RELEASED
registrationStatus Application
ClassificationSchemeItems
publicId 13594094
version 1
longName Sequencing
context Pediatric Cancer
workflowStatus RELEASED
registrationStatus Application
publicId 13594223
version 1
longName Sequencing File
context Pediatric Cancer
workflowStatus RELEASED
registrationStatus Application
publicId 13594225
version 1
longName Single Cell Sequencing File
context Pediatric Cancer
workflowStatus RELEASED
registrationStatus Application
publicId 14733231
version 1
longName CCDI Federation CDEs
context Pediatric Cancer
workflowStatus RELEASED
registrationStatus Application
ClassificationSchemeItems
publicId 14735767
version 1
longName Molecular
context Pediatric Cancer
workflowStatus RELEASED
registrationStatus Application
AlternateNames
name library_source
type GC Alt Name
context CRDC
name library_source_molecule
type CCDI Alt Name
context Pediatric Cancer
name sequencing_file
type CCDI Table
context Pediatric Cancer
name library_source_molecule
type CCDI-Fed Alt Name
context Pediatric Cancer
ReferenceDocuments
documentName PQT
documentText Source Molecule
documentType Preferred Question Text
url
context Pediatric Cancer
apiResponse
type S