| DataElement |
| publicId |
14883075 |
| version |
1 |
| longName |
Disease Lymphoid System Anatomic Site Uberon Identifier |
| shortName |
14883074v1.00:14864421v1.00 |
| definition |
The location within the body where cancer has spread to regional or distant lymph node(s) as captured in the Uberon identifier. |
| context |
CRDC |
| origin |
CRDC:Cancer Research Data Commons |
| workflowStatus |
RELEASED |
| registrationStatus |
Standard |
| latestVersionIndicator |
Yes |
| beginDate |
2024-04-03 |
| endDate |
|
| changeDescription |
|
| administrativeNotes |
9/20/24 Upd PQT for harmonization w other Uberon CDEs. mr;
6/24/24 Upd to C12746 Lymphoid System to align with Uberon. mr;
5/15/24 Added IDC alt name and def as provided by DSS in SN CADSR0003670. mr;
4/26/24 Upd Example to use colon instead of underscore, per email from Sherita Alai. mr;
4/23/24 Released per CRDC DSS SN CADSR0003670. mr;
4/22/24 Upd PQT and def to human readable. Added CRDC CSI. mr;
4/3/24 Created for CRDC RFC49. BF |
| unresolvedIssues |
|
| deletedIndicator |
No |
| createdBy |
FINCHAMB |
| dateCreated |
2024-04-03 |
| modifiedBy |
COLBERTM |
| dateModified |
2024-09-20 |
| DataElementConcept |
| publicId |
14883074 |
| version |
1 |
| longName |
Disease Lymphoid System Anatomic Site |
| shortName |
2404658v1.00:14986652v1.00 |
| definition |
Any abnormal condition of the body or mind that causes discomfort, dysfunction, or distress to the person affected or those in contact with the person. The term is often used broadly to include injuries, disabilities, syndromes, symptoms, deviant behaviors, and atypical variations of structure and function.:The anatomic system that includes the lymph nodes, lymphoid tissues in various organs (spleen, thymus, tonsils, gastrointestinal tract), and lymphatic vessels. It is part of the immune system that offers protection against infections._Named locations of or within the body. |
| context |
CRDC |
| origin |
CRDC:Cancer Research Data Commons |
| workflowStatus |
RELEASED |
| registrationStatus |
Qualified |
| latestVersionIndicator |
Yes |
| beginDate |
2024-04-03 |
| endDate |
|
| changeDescription |
|
| administrativeNotes |
6/24/24 Upd to C12746 Lymphoid System to align with Uberon. mr;
4/23/24 Released per CRDC DSS SN CADSR0003670. mr;
4/3/24 Created for CRDC RFC49. Bf |
| unresolvedIssues |
|
| deletedIndicator |
No |
| createdBy |
FINCHAMB |
| dateCreated |
2024-04-03 |
| modifiedBy |
COLBERTM |
| dateModified |
2024-06-24 |
| ObjectClass |
| publicId |
2404658 |
| version |
1 |
| longName |
Diseases and Disorders |
| shortName |
C2991 |
| definition |
A definite pathologic process with a characteristic set of signs and symptoms. It may affect the whole body or any of its parts, and its etiology, pathology, and prognosis may be known or unknown. |
| context |
NCIP |
| origin |
NCI Thesaurus |
| workflowStatus |
RELEASED |
| registrationStatus |
Application |
| latestVersionIndicator |
Yes |
| beginDate |
2005-09-09 |
| endDate |
|
| changeDescription |
|
| administrativeNotes |
|
| unresolvedIssues |
|
| deletedIndicator |
No |
| createdBy |
PWEST |
| dateCreated |
2005-09-09 |
| modifiedBy |
ONEDATA |
| dateModified |
2005-09-09 |
| Concepts |
| longName |
Disease or Disorder |
| conceptCode |
C2991 |
| definition |
Any abnormal condition of the body or mind that causes discomfort, dysfunction, or distress to the person affected or those in contact with the person. The term is often used broadly to include injuries, disabilities, syndromes, symptoms, deviant behaviors, and atypical variations of structure and function. |
| evsSource |
NCI_CONCEPT_CODE |
| primaryIndicator |
Yes |
| displayOrder |
0 |
|
|
|
| Property |
| publicId |
14986652 |
| version |
1 |
| longName |
Lymphatic System Anatomic Site |
| shortName |
C12746:C13717 |
| definition |
The anatomic system that includes the lymph nodes, lymphoid tissues in various organs (spleen, thymus, tonsils, gastrointestinal tract), and lymphatic vessels. It is part of the immune system that offers protection against infections._Named locations of or within the body. |
| context |
NCIP |
| origin |
|
| workflowStatus |
RELEASED |
| registrationStatus |
Application |
| latestVersionIndicator |
Yes |
| beginDate |
2024-06-24 |
| endDate |
|
| changeDescription |
|
| administrativeNotes |
|
| unresolvedIssues |
|
| deletedIndicator |
No |
| createdBy |
COLBERTM |
| dateCreated |
2024-06-24 |
| modifiedBy |
COLBERTM |
| dateModified |
2024-06-24 |
| Concepts |
| longName |
Lymphatic System |
| conceptCode |
C12746 |
| definition |
The anatomic system that includes the lymph nodes, lymphoid tissues in various organs (spleen, thymus, tonsils, gastrointestinal tract), and lymphatic vessels. It is part of the immune system that offers protection against infections. |
| evsSource |
NCI_CONCEPT_CODE |
| primaryIndicator |
No |
| displayOrder |
1 |
|
| longName |
Anatomic Site |
| conceptCode |
C13717 |
| definition |
Named locations of or within the body. |
| evsSource |
NCI_CONCEPT_CODE |
| primaryIndicator |
Yes |
| displayOrder |
0 |
|
|
|
| ConceptualDomain |
| publicId |
2435018 |
| version |
1 |
| longName |
Clinical or Research Activity |
| shortName |
C16203 |
| definition |
Any specific activity undertaken during the course of a clinical study or research protocol. |
| context |
NCIP |
| origin |
NCI Thesaurus |
| workflowStatus |
RELEASED |
| registrationStatus |
Application |
| latestVersionIndicator |
Yes |
| beginDate |
2005-12-06 |
| endDate |
|
| changeDescription |
|
| administrativeNotes |
|
| unresolvedIssues |
|
| deletedIndicator |
No |
| createdBy |
CURTIST |
| dateCreated |
2005-12-06 |
| modifiedBy |
SBR |
| dateModified |
2006-12-20 |
|
|
| ValueDomain |
| publicId |
14864421 |
| version |
1 |
| longName |
Lymphoid System Uberon Identifier |
| shortName |
14864421v1.00 |
| definition |
The anatomic system that includes the lymph nodes, lymphoid tissues in various organs (spleen, thymus, tonsils, gastrointestinal tract), and lymphatic vessels. It is part of the immune system that offers protection against infections.._An integrated cross-species anatomy ontology representing a variety of entities classified according to traditional anatomical criteria such as structure, function, and developmental lineage. The ontology includes comprehensive relationships to taxon-specific anatomical ontologies, allowing integration of functional, phenotype and expression data._One or more characters used to identify, name, or characterize the nature, properties, or contents of a thing. |
| context |
CRDC |
| type |
Enumerated by Reference |
| referenceTerminology |
Uberon|C190111 |
| referenceTerminologyDataValueSource |
Code |
| dataType |
CHARACTER |
| minLength |
|
| maxLength |
30 |
| minValue |
|
| maxValue |
|
| decimalPlace |
|
| origin |
CRDC:Cancer Research Data Commons |
| workflowStatus |
RELEASED |
| registrationStatus |
Qualified |
| latestVersionIndicator |
Yes |
| beginDate |
2024-03-28 |
| endDate |
|
| changeDescription |
|
| administrativeNotes |
6/24/24 Upd concepts to use C12746, Lymphatic System, to align with Uberon. mr;
4/23/24 Released per CRDC DSS SN CADSR0003670. mr;
3/28/24 created for CRDC DSS Standard DE "Lymph Node Involved Site" which uses a sub-set of the Uberon terminology. jk |
| unresolvedIssues |
|
| deletedIndicator |
No |
| createdBy |
JKNABLE |
| dateCreated |
2024-03-28 |
| modifiedBy |
COLBERTM |
| dateModified |
2024-06-24 |
| PermissibleValues |
| publicId |
9160958 |
| value |
http://purl.obolibrary.org/obo/UBERON_0002465 |
| valueDescription |
|
| origin |
|
| beginDate |
2024-04-29 |
| endDate |
|
| deletedIndicator |
No |
| createdBy |
JKNABLE |
| dateCreated |
2024-04-29 |
| modifiedBy |
COLBERTM |
| dateModified |
2024-05-15 |
| ValueMeaning |
| publicId |
14912950 |
| version |
1 |
| longName |
Uberon Lymphoid System |
| shortName |
14912950v1.00 |
| definition |
An integrated cross-species anatomy ontology representing a variety of entities classified according to traditional anatomical criteria such as structure, function, and developmental lineage. The ontology includes comprehensive relationships to taxon-specific anatomical ontologies, allowing integration of functional, phenotype and expression data._The anatomic system that includes the lymph nodes, lymphoid tissues in various organs (spleen, thymus, tonsils, gastrointestinal tract), and lymphatic vessels. It is part of the immune system that offers protection against infections. |
| context |
NCIP |
| origin |
|
| workflowStatus |
RELEASED |
| registrationStatus |
Application |
| latestVersionIndicator |
Yes |
| beginDate |
2024-04-29 |
| endDate |
|
| changeDescription |
|
| administrativeNotes |
6/24/24 Upd to C12746 Lymphoid System to align with Uberon. mr |
| unresolvedIssues |
|
| deletedIndicator |
No |
| createdBy |
JKNABLE |
| dateCreated |
2024-04-29 |
| modifiedBy |
COLBERTM |
| dateModified |
2024-06-24 |
| Concepts |
| longName |
Lymphatic System |
| conceptCode |
C12746 |
| definition |
The anatomic system that includes the lymph nodes, lymphoid tissues in various organs (spleen, thymus, tonsils, gastrointestinal tract), and lymphatic vessels. It is part of the immune system that offers protection against infections. |
| evsSource |
NCI_CONCEPT_CODE |
| primaryIndicator |
Yes |
| displayOrder |
0 |
|
| longName |
Uberon |
| conceptCode |
C190111 |
| definition |
An integrated cross-species anatomy ontology representing a variety of entities classified according to traditional anatomical criteria such as structure, function, and developmental lineage. The ontology includes comprehensive relationships to taxon-specific anatomical ontologies, allowing integration of functional, phenotype and expression data. |
| evsSource |
NCI_CONCEPT_CODE |
| primaryIndicator |
No |
| displayOrder |
1 |
|
|
|
|
|
| ConceptualDomain |
| publicId |
2435018 |
| version |
1 |
| longName |
Clinical or Research Activity |
| shortName |
C16203 |
| definition |
Any specific activity undertaken during the course of a clinical study or research protocol. |
| context |
NCIP |
| origin |
NCI Thesaurus |
| workflowStatus |
RELEASED |
| registrationStatus |
Application |
| latestVersionIndicator |
Yes |
| beginDate |
2005-12-06 |
| endDate |
|
| changeDescription |
|
| administrativeNotes |
|
| unresolvedIssues |
|
| deletedIndicator |
No |
| createdBy |
CURTIST |
| dateCreated |
2005-12-06 |
| modifiedBy |
SBR |
| dateModified |
2006-12-20 |
|
| RepresentationTerm |
| publicId |
14986651 |
| version |
1 |
| longName |
Uberon Lymphatic System Identifier |
| shortName |
14986651v1.00 |
| definition |
An integrated cross-species anatomy ontology representing a variety of entities classified according to traditional anatomical criteria such as structure, function, and developmental lineage. The ontology includes comprehensive relationships to taxon-specific anatomical ontologies, allowing integration of functional, phenotype and expression data._The anatomic system that includes the lymph nodes, lymphoid tissues in various organs (spleen, thymus, tonsils, gastrointestinal tract), and lymphatic vessels. It is part of the immune system that offers protection against infections._One or more characters used to identify, name, or characterize the nature, properties, or contents of a thing. |
| context |
NCIP |
| origin |
|
| workflowStatus |
RELEASED |
| registrationStatus |
Application |
| latestVersionIndicator |
Yes |
| beginDate |
2024-06-24 |
| endDate |
|
| changeDescription |
|
| administrativeNotes |
|
| unresolvedIssues |
|
| deletedIndicator |
No |
| createdBy |
COLBERTM |
| dateCreated |
2024-06-24 |
| modifiedBy |
COLBERTM |
| dateModified |
2024-06-24 |
| Concepts |
| longName |
Uberon |
| conceptCode |
C190111 |
| definition |
An integrated cross-species anatomy ontology representing a variety of entities classified according to traditional anatomical criteria such as structure, function, and developmental lineage. The ontology includes comprehensive relationships to taxon-specific anatomical ontologies, allowing integration of functional, phenotype and expression data. |
| evsSource |
NCI_CONCEPT_CODE |
| primaryIndicator |
No |
| displayOrder |
2 |
|
| longName |
Lymphatic System |
| conceptCode |
C12746 |
| definition |
The anatomic system that includes the lymph nodes, lymphoid tissues in various organs (spleen, thymus, tonsils, gastrointestinal tract), and lymphatic vessels. It is part of the immune system that offers protection against infections. |
| evsSource |
NCI_CONCEPT_CODE |
| primaryIndicator |
No |
| displayOrder |
1 |
|
| longName |
Identifier |
| conceptCode |
C25364 |
| definition |
One or more characters used to identify, name, or characterize the nature, properties, or contents of a thing. |
| evsSource |
NCI_CONCEPT_CODE |
| primaryIndicator |
Yes |
| displayOrder |
0 |
|
|
|
|
| ClassificationSchemes |
| publicId |
10466051 |
| version |
1 |
| longName |
All CRDC Standard CDEs |
| context |
CRDC |
| workflowStatus |
RELEASED |
| registrationStatus |
Application |
| ClassificationSchemeItems |
| publicId |
10466054 |
| version |
1 |
| longName |
Diagnosis |
| context |
CRDC |
| workflowStatus |
RELEASED |
| registrationStatus |
Application |
|
|
|
|
| AlternateNames |
| name |
Lymph Node Involvement Anatomic Site UBERON Identifier |
| type |
CRDC Alt Name |
| context |
CRDC |
|
| name |
Lymph Node Involvement Anatomic Site Identifier |
| type |
IDC Alt Name |
| context |
CRDC |
|
|
| ReferenceDocuments |
| documentName |
PQT |
| documentText |
Lymph Node Site Uberon ID |
| documentType |
Preferred Question Text |
| url |
|
| context |
CRDC |
|
| documentName |
CRDC Instruction |
| documentText |
1. Go to http://purl.obolibrary.org/obo/UBERON_0002465 (UBERON Lymphoid System (a subtree of UBERON))
2. Use the search field to search for your term.
3. Use the Copy button at the top of the search results to copy the Uberon ID. |
| documentType |
Instructions |
| url |
http://purl.obolibrary.org/obo/UBERON_0002465 |
| context |
CRDC |
|
| documentName |
CRDC Example |
| documentText |
UBERON:0000029 |
| documentType |
EXAMPLE |
| url |
|
| context |
CRDC |
|
| documentName |
CRDC SDO Reference |
| documentText |
UBERON Lymphoid System |
| documentType |
REFERENCE |
| url |
http://purl.obolibrary.org/obo/UBERON_0002465 |
| context |
CRDC |
|
|
|