| DataElement |
| publicId |
14883072 |
| version |
1 |
| longName |
Disease Body Part Examined Anatomic Site Uberon Identifier |
| shortName |
14883071v1.00:11365369v1.00 |
| definition |
The location within the body that was inspected or evaluated as captured in the Uberon identifier. |
| context |
CRDC |
| origin |
CRDC:Cancer Research Data Commons |
| workflowStatus |
RELEASED |
| registrationStatus |
Standard |
| latestVersionIndicator |
Yes |
| beginDate |
2024-04-03 |
| endDate |
|
| changeDescription |
|
| administrativeNotes |
5/19/26 Added IDC CSI per Imaging submission data model metrics spreadsheet. mr;
5/21/25 Classified in GDC Candidate CSI, added alt name, alt def, per June 2025 GDC DD. sl;
2/13/25 added RCI AQT and CSI RCI Treatment. sl;
9/20/24 Upd PQT for harmonization w other Uberon CDEs. mr;
5/21/24 Upd Instructions ref doc wording. mr;
5/15/24 Added IDC alt name and alt def as provided by DSS in SN CADSR0003669. mr;
4/26/24 Upd Example to use colon instead of underscore, per email from Sherita Alai. mr;
4/23/24 Released per CRDC DSS SN CADSR0003669. mr;
4/22/24 Upd def and PQT to human readable. Added CRDC CSI, ref doc instructions. mr;
4/4/24 Created for CRDC RFC49. Bf |
| unresolvedIssues |
|
| deletedIndicator |
No |
| createdBy |
FINCHAMB |
| dateCreated |
2024-04-03 |
| modifiedBy |
COLBERTM |
| dateModified |
2026-05-19 |
| DataElementConcept |
| publicId |
14883071 |
| version |
1 |
| longName |
Disease Body Part Examined Anatomic Site |
| shortName |
2404658v1.00:14883070v1.00 |
| definition |
Any abnormal condition of the body or mind that causes discomfort, dysfunction, or distress to the person affected or those in contact with the person. The term is often used broadly to include injuries, disabilities, syndromes, symptoms, deviant behaviors, and atypical variations of structure and function.:Any part of an organism._Having been subjected to inspection or evaluation._Named locations of or within the body. |
| context |
CRDC |
| origin |
CRDC:Cancer Research Data Commons |
| workflowStatus |
RELEASED |
| registrationStatus |
Standard |
| latestVersionIndicator |
Yes |
| beginDate |
2024-04-03 |
| endDate |
|
| changeDescription |
|
| administrativeNotes |
4/23/24 Released per CRDC DSS SN CADSR0003669. mr;
4/3/24 Created for CRDC RFC49. Bf |
| unresolvedIssues |
|
| deletedIndicator |
No |
| createdBy |
FINCHAMB |
| dateCreated |
2024-04-03 |
| modifiedBy |
SLAUER |
| dateModified |
2025-07-08 |
| ObjectClass |
| publicId |
2404658 |
| version |
1 |
| longName |
Diseases and Disorders |
| shortName |
C2991 |
| definition |
A definite pathologic process with a characteristic set of signs and symptoms. It may affect the whole body or any of its parts, and its etiology, pathology, and prognosis may be known or unknown. |
| context |
NCIP |
| origin |
NCI Thesaurus |
| workflowStatus |
RELEASED |
| registrationStatus |
Application |
| latestVersionIndicator |
Yes |
| beginDate |
2005-09-09 |
| endDate |
|
| changeDescription |
|
| administrativeNotes |
|
| unresolvedIssues |
|
| deletedIndicator |
No |
| createdBy |
PWEST |
| dateCreated |
2005-09-09 |
| modifiedBy |
ONEDATA |
| dateModified |
2005-09-09 |
| Concepts |
| longName |
Disease or Disorder |
| conceptCode |
C2991 |
| definition |
Any abnormal condition of the body or mind that causes discomfort, dysfunction, or distress to the person affected or those in contact with the person. The term is often used broadly to include injuries, disabilities, syndromes, symptoms, deviant behaviors, and atypical variations of structure and function. |
| evsSource |
NCI_CONCEPT_CODE |
| primaryIndicator |
Yes |
| displayOrder |
0 |
|
|
|
| Property |
| publicId |
14883070 |
| version |
1 |
| longName |
Body Part Examined Anatomic Site |
| shortName |
C32221:C25500:C13717 |
| definition |
Any part of an organism._Having been subjected to inspection or evaluation._Named locations of or within the body. |
| context |
NCIP |
| origin |
|
| workflowStatus |
RELEASED |
| registrationStatus |
Application |
| latestVersionIndicator |
Yes |
| beginDate |
2024-04-03 |
| endDate |
|
| changeDescription |
|
| administrativeNotes |
|
| unresolvedIssues |
|
| deletedIndicator |
No |
| createdBy |
FINCHAMB |
| dateCreated |
2024-04-03 |
| modifiedBy |
FINCHAMB |
| dateModified |
2024-04-03 |
| Concepts |
| longName |
Body Part |
| conceptCode |
C32221 |
| definition |
Any part of an organism. |
| evsSource |
NCI_CONCEPT_CODE |
| primaryIndicator |
No |
| displayOrder |
2 |
|
| longName |
Examined |
| conceptCode |
C25500 |
| definition |
Having been subjected to inspection or evaluation. |
| evsSource |
NCI_CONCEPT_CODE |
| primaryIndicator |
No |
| displayOrder |
1 |
|
| longName |
Anatomic Site |
| conceptCode |
C13717 |
| definition |
Named locations of or within the body. |
| evsSource |
NCI_CONCEPT_CODE |
| primaryIndicator |
Yes |
| displayOrder |
0 |
|
|
|
| ConceptualDomain |
| publicId |
2435018 |
| version |
1 |
| longName |
Clinical or Research Activity |
| shortName |
C16203 |
| definition |
Any specific activity undertaken during the course of a clinical study or research protocol. |
| context |
NCIP |
| origin |
NCI Thesaurus |
| workflowStatus |
RELEASED |
| registrationStatus |
Application |
| latestVersionIndicator |
Yes |
| beginDate |
2005-12-06 |
| endDate |
|
| changeDescription |
|
| administrativeNotes |
|
| unresolvedIssues |
|
| deletedIndicator |
No |
| createdBy |
CURTIST |
| dateCreated |
2005-12-06 |
| modifiedBy |
SBR |
| dateModified |
2006-12-20 |
|
|
| ValueDomain |
| publicId |
11365369 |
| version |
1 |
| longName |
Uberon Identifier |
| shortName |
11365369v1.00 |
| definition |
A symbol or combination of symbols and characters to capture the UBERON anatomic site code (ex: UBERON:0006209 or UBERON_0006209)._One or more characters used to identify, name, or characterize the nature, properties, or contents of a thing. |
| context |
CRDC |
| type |
Enumerated by Reference |
| referenceTerminology |
Uberon|C190111 |
| referenceTerminologyDataValueSource |
Code |
| dataType |
CHARACTER |
| minLength |
|
| maxLength |
30 |
| minValue |
|
| maxValue |
|
| decimalPlace |
|
| origin |
CRDC:Cancer Research Data Commons |
| workflowStatus |
RELEASED |
| registrationStatus |
Qualified |
| latestVersionIndicator |
Yes |
| beginDate |
2022-10-03 |
| endDate |
|
| changeDescription |
|
| administrativeNotes |
5/15/24 Modified PV to be the URL to Uberon. Per mtg w DW on 5/2/24.
4/23/24 Released per DSS for use in the Anatomic Site CDEs. mr;
3/28/23 Upd VD type from Enumerated to Enumerated by-reference for this existing by-ref VD. We retained the existing ref docs pointing to the external source. mr;
2/1/23 Released per CRDC DSS mtg 2/1. Possible versioning/revisions in future if by-reference/external std policies change. mr;
1/5/23 Updated CD to be consistent w other CRDC AIs. mr;
12/28/22 Updated Coding Instruction to be consistent w other by-reference CDEs. mr;
12/7/22 Changed rep term from Code to ID since Uberon calls it an ID. mr;
12/6/22 Changed to enumerated and added single PV pointing to Uberon. mr;
11/21/22 Released per CRDC DSS. mr;
11/17/22 Changed rep term from Anat Site to Code. mr;
10/5/22 Per Smita and Wendy, this DE/DEC/VD is on hold until external reference is determined and mapped. mr;
10/3/22 Created per CRDC DSS. mr; |
| unresolvedIssues |
|
| deletedIndicator |
No |
| createdBy |
COLBERTM |
| dateCreated |
2022-10-03 |
| modifiedBy |
SLAUER |
| dateModified |
2025-07-08 |
| PermissibleValues |
| publicId |
9109702 |
| value |
https://www.ebi.ac.uk/ols4/ontologies/uberon |
| valueDescription |
|
| origin |
|
| beginDate |
2022-12-06 |
| endDate |
|
| deletedIndicator |
No |
| createdBy |
COLBERTM |
| dateCreated |
2022-12-06 |
| modifiedBy |
COLBERTM |
| dateModified |
2024-05-15 |
| ValueMeaning |
| publicId |
12126011 |
| version |
1 |
| longName |
Uberon |
| shortName |
12126011v1.00 |
| definition |
An integrated cross-species anatomy ontology representing a variety of entities classified according to traditional anatomical criteria such as structure, function, and developmental lineage. The ontology includes comprehensive relationships to taxon-specific anatomical ontologies, allowing integration of functional, phenotype and expression data. |
| context |
NCIP |
| origin |
|
| workflowStatus |
RELEASED |
| registrationStatus |
Application |
| latestVersionIndicator |
Yes |
| beginDate |
2022-12-06 |
| endDate |
|
| changeDescription |
|
| administrativeNotes |
|
| unresolvedIssues |
|
| deletedIndicator |
No |
| createdBy |
COLBERTM |
| dateCreated |
2022-12-06 |
| modifiedBy |
JKNABLE |
| dateModified |
2024-04-29 |
| Concepts |
| longName |
Uberon |
| conceptCode |
C190111 |
| definition |
An integrated cross-species anatomy ontology representing a variety of entities classified according to traditional anatomical criteria such as structure, function, and developmental lineage. The ontology includes comprehensive relationships to taxon-specific anatomical ontologies, allowing integration of functional, phenotype and expression data. |
| evsSource |
NCI_CONCEPT_CODE |
| primaryIndicator |
Yes |
| displayOrder |
0 |
|
|
|
|
|
| ConceptualDomain |
| publicId |
2435018 |
| version |
1 |
| longName |
Clinical or Research Activity |
| shortName |
C16203 |
| definition |
Any specific activity undertaken during the course of a clinical study or research protocol. |
| context |
NCIP |
| origin |
NCI Thesaurus |
| workflowStatus |
RELEASED |
| registrationStatus |
Application |
| latestVersionIndicator |
Yes |
| beginDate |
2005-12-06 |
| endDate |
|
| changeDescription |
|
| administrativeNotes |
|
| unresolvedIssues |
|
| deletedIndicator |
No |
| createdBy |
CURTIST |
| dateCreated |
2005-12-06 |
| modifiedBy |
SBR |
| dateModified |
2006-12-20 |
|
| RepresentationTerm |
| publicId |
12129175 |
| version |
1 |
| longName |
Uberon Identifier |
| shortName |
12129175v1.00 |
| definition |
An integrated cross-species anatomy ontology representing a variety of entities classified according to traditional anatomical criteria such as structure, function, and developmental lineage. The ontology includes comprehensive relationships to taxon-specific anatomical ontologies, allowing integration of functional, phenotype and expression data._One or more characters used to identify, name, or characterize the nature, properties, or contents of a thing. |
| context |
NCIP |
| origin |
|
| workflowStatus |
RELEASED |
| registrationStatus |
Application |
| latestVersionIndicator |
Yes |
| beginDate |
2022-12-07 |
| endDate |
|
| changeDescription |
|
| administrativeNotes |
|
| unresolvedIssues |
|
| deletedIndicator |
No |
| createdBy |
COLBERTM |
| dateCreated |
2022-12-07 |
| modifiedBy |
COLBERTM |
| dateModified |
2022-12-07 |
| Concepts |
| longName |
Uberon |
| conceptCode |
C190111 |
| definition |
An integrated cross-species anatomy ontology representing a variety of entities classified according to traditional anatomical criteria such as structure, function, and developmental lineage. The ontology includes comprehensive relationships to taxon-specific anatomical ontologies, allowing integration of functional, phenotype and expression data. |
| evsSource |
NCI_CONCEPT_CODE |
| primaryIndicator |
No |
| displayOrder |
1 |
|
| longName |
Identifier |
| conceptCode |
C25364 |
| definition |
One or more characters used to identify, name, or characterize the nature, properties, or contents of a thing. |
| evsSource |
NCI_CONCEPT_CODE |
| primaryIndicator |
Yes |
| displayOrder |
0 |
|
|
|
|
| ClassificationSchemes |
| publicId |
10429357 |
| version |
1 |
| longName |
GDC (Genomic Data Commons) |
| context |
CRDC |
| workflowStatus |
DRAFT NEW |
| registrationStatus |
Application |
| ClassificationSchemeItems |
| publicId |
14506028 |
| version |
1 |
| longName |
Candidate New GDC CDEs |
| context |
CRDC |
| workflowStatus |
DRAFT NEW |
| registrationStatus |
Application |
|
|
|
| publicId |
10466051 |
| version |
1 |
| longName |
All CRDC Standard CDEs |
| context |
CRDC |
| workflowStatus |
RELEASED |
| registrationStatus |
Application |
| ClassificationSchemeItems |
| publicId |
10466054 |
| version |
1 |
| longName |
Diagnosis |
| context |
CRDC |
| workflowStatus |
RELEASED |
| registrationStatus |
Application |
|
|
|
| publicId |
15711259 |
| version |
1 |
| longName |
RCI (Rare Cancer Initiative) |
| context |
Pediatric Cancer |
| workflowStatus |
RELEASED |
| registrationStatus |
Application |
| ClassificationSchemeItems |
| publicId |
15713367 |
| version |
1 |
| longName |
Treatment |
| context |
Pediatric Cancer |
| workflowStatus |
RELEASED |
| registrationStatus |
Application |
|
|
|
| publicId |
17012038 |
| version |
1 |
| longName |
IDC (Imaging Data Commons) |
| context |
CRDC |
| workflowStatus |
RELEASED |
| registrationStatus |
Application |
| ClassificationSchemeItems |
| publicId |
17012051 |
| version |
1 |
| longName |
Radiology |
| context |
CRDC |
| workflowStatus |
RELEASED |
| registrationStatus |
Application |
|
|
|
|
| AlternateNames |
| name |
Body Part Examined Anatomic Site UBERON Identifier |
| type |
CRDC Alt Name |
| context |
CRDC |
|
| name |
Body Part Examined Anatomic Site Identifier |
| type |
IDC Alt Name |
| context |
CRDC |
|
| name |
imaging_anatomic_site |
| type |
GDC Alt Name |
| context |
GDC |
|
|
| ReferenceDocuments |
| documentName |
PQT |
| documentText |
Body Part Examined Site Uberon ID |
| documentType |
Preferred Question Text |
| url |
|
| context |
CRDC |
|
| documentName |
CRDC Instruction |
| documentText |
1. Go to https://www.ebi.ac.uk/ols4/ontologies/uberon
2. Use the search field to search for your term.
3. Use the Copy button at the top of the search results to copy the Uberon ID.
4. Store selected anatomic term as "UBERON:0002048" in your repository |
| documentType |
Instructions |
| url |
|
| context |
CRDC |
|
| documentName |
CRDC Example |
| documentText |
UBERON:0002048 |
| documentType |
EXAMPLE |
| url |
|
| context |
CRDC |
|
| documentName |
CRDC SDO Reference |
| documentText |
UBERON |
| documentType |
REFERENCE |
| url |
https://www.ebi.ac.uk/ols4/ontologies/uberon |
| context |
CRDC |
|
| documentName |
RCI Question |
| documentText |
Location for each modality? |
| documentType |
Alternate Question Text |
| url |
|
| context |
Pediatric Cancer |
|
|
|