| DataElement |
| publicId |
14883047 |
| version |
1 |
| longName |
Disease Primary Site Uberon Identifier |
| shortName |
14883046v1.00:11365369v1.00 |
| definition |
The location within the body from where the disease of interest originated as captured in the Uberon identifier. |
| context |
CRDC |
| origin |
CRDC:Cancer Research Data Commons |
| workflowStatus |
RELEASED |
| registrationStatus |
Standard |
| latestVersionIndicator |
Yes |
| beginDate |
2024-04-03 |
| endDate |
|
| changeDescription |
|
| administrativeNotes |
7/13/26 added/updated CIDC Appendix A Alts, definition, and CSI. jk
5/22/26 Upd IDC alt def per Ulli/web version of Imaging submission data model. mr;
3/18/26 Added IDC Diagnosis alt name, def, CSI. mr;
2/4/26 added PSDC Alts and CSI per model property-CDE mapping review. jk;
7/8/25 Added RCI CSI per RCI CRF Questions 2025-06-30-metrics. sl;
5/22/25 Added alt names, alt defs, per June 2025 GDC DD. sl;
05/02/25:Added CIDC alt name per CIMAC_CIDC_Template_of_Clinical_Data_Elements V3.6 XLS. jlk
10/4/24 Added alt name and TCIA rec CDE's csi info. bf;
9/20/24 Upd PQT for harmonization w other Uberon CDEs. mr;
9/19/24 changed ALT Name type from GDC Name to GDC ALT Name. bf;
9/18/24 Per CRDC Model submission XLS, added Alt Name CRDC Submission Model. bf;
9/16/24 added PDC alt name. bf;
9/13/24 added CRDC Submission Model, GDC and PDC classification info and PDC and GDC alt names. bf;
9/10/24 released as standard, added inst ref doc and CSI. jk
6/24/24 Removed duplicate terms in LN. mr;
6/25/24 Added PQT. mr;
5/20/24 Upd to human-readable def. mr;
4/3/24 Created for CRDC RFC49. Bf |
| unresolvedIssues |
|
| deletedIndicator |
No |
| createdBy |
FINCHAMB |
| dateCreated |
2024-04-03 |
| modifiedBy |
JKNABLE |
| dateModified |
2026-07-13 |
| DataElementConcept |
| publicId |
14883046 |
| version |
1 |
| longName |
Disease Primary Site |
| shortName |
2404658v1.00:14883045v1.00 |
| definition |
Any abnormal condition of the body or mind that causes discomfort, dysfunction, or distress to the person affected or those in contact with the person. The term is often used broadly to include injuries, disabilities, syndromes, symptoms, deviant behaviors, and atypical variations of structure and function.:The anatomic location where a disease of interest originated. |
| context |
CRDC |
| origin |
CRDC:Cancer Research Data Commons |
| workflowStatus |
RELEASED |
| registrationStatus |
Qualified |
| latestVersionIndicator |
Yes |
| beginDate |
2024-04-03 |
| endDate |
|
| changeDescription |
|
| administrativeNotes |
9/10/24 released. jk 6/24/24 Removed duplicate term in LN. mr;
4/3/24 Created for CRDC RFC49. Bf |
| unresolvedIssues |
|
| deletedIndicator |
No |
| createdBy |
FINCHAMB |
| dateCreated |
2024-04-03 |
| modifiedBy |
SLAUER |
| dateModified |
2025-07-08 |
| ObjectClass |
| publicId |
2404658 |
| version |
1 |
| longName |
Diseases and Disorders |
| shortName |
C2991 |
| definition |
A definite pathologic process with a characteristic set of signs and symptoms. It may affect the whole body or any of its parts, and its etiology, pathology, and prognosis may be known or unknown. |
| context |
NCIP |
| origin |
NCI Thesaurus |
| workflowStatus |
RELEASED |
| registrationStatus |
Application |
| latestVersionIndicator |
Yes |
| beginDate |
2005-09-09 |
| endDate |
|
| changeDescription |
|
| administrativeNotes |
|
| unresolvedIssues |
|
| deletedIndicator |
No |
| createdBy |
PWEST |
| dateCreated |
2005-09-09 |
| modifiedBy |
ONEDATA |
| dateModified |
2005-09-09 |
| Concepts |
| longName |
Disease or Disorder |
| conceptCode |
C2991 |
| definition |
Any abnormal condition of the body or mind that causes discomfort, dysfunction, or distress to the person affected or those in contact with the person. The term is often used broadly to include injuries, disabilities, syndromes, symptoms, deviant behaviors, and atypical variations of structure and function. |
| evsSource |
NCI_CONCEPT_CODE |
| primaryIndicator |
Yes |
| displayOrder |
0 |
|
|
|
| Property |
| publicId |
14883045 |
| version |
1 |
| longName |
Primary Site of Disease |
| shortName |
C158874 |
| definition |
The anatomic location where a disease of interest originated. |
| context |
NCIP |
| origin |
|
| workflowStatus |
RELEASED |
| registrationStatus |
Application |
| latestVersionIndicator |
Yes |
| beginDate |
2024-04-03 |
| endDate |
|
| changeDescription |
|
| administrativeNotes |
|
| unresolvedIssues |
|
| deletedIndicator |
No |
| createdBy |
FINCHAMB |
| dateCreated |
2024-04-03 |
| modifiedBy |
FINCHAMB |
| dateModified |
2024-04-03 |
| Concepts |
| longName |
Primary Site of Disease |
| conceptCode |
C158874 |
| definition |
The anatomic location where a disease of interest originated. |
| evsSource |
NCI_CONCEPT_CODE |
| primaryIndicator |
Yes |
| displayOrder |
0 |
|
|
|
| ConceptualDomain |
| publicId |
2435018 |
| version |
1 |
| longName |
Clinical or Research Activity |
| shortName |
C16203 |
| definition |
Any specific activity undertaken during the course of a clinical study or research protocol. |
| context |
NCIP |
| origin |
NCI Thesaurus |
| workflowStatus |
RELEASED |
| registrationStatus |
Application |
| latestVersionIndicator |
Yes |
| beginDate |
2005-12-06 |
| endDate |
|
| changeDescription |
|
| administrativeNotes |
|
| unresolvedIssues |
|
| deletedIndicator |
No |
| createdBy |
CURTIST |
| dateCreated |
2005-12-06 |
| modifiedBy |
SBR |
| dateModified |
2006-12-20 |
|
|
| ValueDomain |
| publicId |
11365369 |
| version |
1 |
| longName |
Uberon Identifier |
| shortName |
11365369v1.00 |
| definition |
A symbol or combination of symbols and characters to capture the UBERON anatomic site code (ex: UBERON:0006209 or UBERON_0006209)._One or more characters used to identify, name, or characterize the nature, properties, or contents of a thing. |
| context |
CRDC |
| type |
Enumerated by Reference |
| referenceTerminology |
Uberon|C190111 |
| referenceTerminologyDataValueSource |
Code |
| dataType |
CHARACTER |
| minLength |
|
| maxLength |
30 |
| minValue |
|
| maxValue |
|
| decimalPlace |
|
| origin |
CRDC:Cancer Research Data Commons |
| workflowStatus |
RELEASED |
| registrationStatus |
Qualified |
| latestVersionIndicator |
Yes |
| beginDate |
2022-10-03 |
| endDate |
|
| changeDescription |
|
| administrativeNotes |
5/15/24 Modified PV to be the URL to Uberon. Per mtg w DW on 5/2/24.
4/23/24 Released per DSS for use in the Anatomic Site CDEs. mr;
3/28/23 Upd VD type from Enumerated to Enumerated by-reference for this existing by-ref VD. We retained the existing ref docs pointing to the external source. mr;
2/1/23 Released per CRDC DSS mtg 2/1. Possible versioning/revisions in future if by-reference/external std policies change. mr;
1/5/23 Updated CD to be consistent w other CRDC AIs. mr;
12/28/22 Updated Coding Instruction to be consistent w other by-reference CDEs. mr;
12/7/22 Changed rep term from Code to ID since Uberon calls it an ID. mr;
12/6/22 Changed to enumerated and added single PV pointing to Uberon. mr;
11/21/22 Released per CRDC DSS. mr;
11/17/22 Changed rep term from Anat Site to Code. mr;
10/5/22 Per Smita and Wendy, this DE/DEC/VD is on hold until external reference is determined and mapped. mr;
10/3/22 Created per CRDC DSS. mr; |
| unresolvedIssues |
|
| deletedIndicator |
No |
| createdBy |
COLBERTM |
| dateCreated |
2022-10-03 |
| modifiedBy |
SLAUER |
| dateModified |
2025-07-08 |
| PermissibleValues |
| publicId |
9109702 |
| value |
https://www.ebi.ac.uk/ols4/ontologies/uberon |
| valueDescription |
|
| origin |
|
| beginDate |
2022-12-06 |
| endDate |
|
| deletedIndicator |
No |
| createdBy |
COLBERTM |
| dateCreated |
2022-12-06 |
| modifiedBy |
COLBERTM |
| dateModified |
2024-05-15 |
| ValueMeaning |
| publicId |
12126011 |
| version |
1 |
| longName |
Uberon |
| shortName |
12126011v1.00 |
| definition |
An integrated cross-species anatomy ontology representing a variety of entities classified according to traditional anatomical criteria such as structure, function, and developmental lineage. The ontology includes comprehensive relationships to taxon-specific anatomical ontologies, allowing integration of functional, phenotype and expression data. |
| context |
NCIP |
| origin |
|
| workflowStatus |
RELEASED |
| registrationStatus |
Application |
| latestVersionIndicator |
Yes |
| beginDate |
2022-12-06 |
| endDate |
|
| changeDescription |
|
| administrativeNotes |
|
| unresolvedIssues |
|
| deletedIndicator |
No |
| createdBy |
COLBERTM |
| dateCreated |
2022-12-06 |
| modifiedBy |
JKNABLE |
| dateModified |
2024-04-29 |
| Concepts |
| longName |
Uberon |
| conceptCode |
C190111 |
| definition |
An integrated cross-species anatomy ontology representing a variety of entities classified according to traditional anatomical criteria such as structure, function, and developmental lineage. The ontology includes comprehensive relationships to taxon-specific anatomical ontologies, allowing integration of functional, phenotype and expression data. |
| evsSource |
NCI_CONCEPT_CODE |
| primaryIndicator |
Yes |
| displayOrder |
0 |
|
|
|
|
|
| ConceptualDomain |
| publicId |
2435018 |
| version |
1 |
| longName |
Clinical or Research Activity |
| shortName |
C16203 |
| definition |
Any specific activity undertaken during the course of a clinical study or research protocol. |
| context |
NCIP |
| origin |
NCI Thesaurus |
| workflowStatus |
RELEASED |
| registrationStatus |
Application |
| latestVersionIndicator |
Yes |
| beginDate |
2005-12-06 |
| endDate |
|
| changeDescription |
|
| administrativeNotes |
|
| unresolvedIssues |
|
| deletedIndicator |
No |
| createdBy |
CURTIST |
| dateCreated |
2005-12-06 |
| modifiedBy |
SBR |
| dateModified |
2006-12-20 |
|
| RepresentationTerm |
| publicId |
12129175 |
| version |
1 |
| longName |
Uberon Identifier |
| shortName |
12129175v1.00 |
| definition |
An integrated cross-species anatomy ontology representing a variety of entities classified according to traditional anatomical criteria such as structure, function, and developmental lineage. The ontology includes comprehensive relationships to taxon-specific anatomical ontologies, allowing integration of functional, phenotype and expression data._One or more characters used to identify, name, or characterize the nature, properties, or contents of a thing. |
| context |
NCIP |
| origin |
|
| workflowStatus |
RELEASED |
| registrationStatus |
Application |
| latestVersionIndicator |
Yes |
| beginDate |
2022-12-07 |
| endDate |
|
| changeDescription |
|
| administrativeNotes |
|
| unresolvedIssues |
|
| deletedIndicator |
No |
| createdBy |
COLBERTM |
| dateCreated |
2022-12-07 |
| modifiedBy |
COLBERTM |
| dateModified |
2022-12-07 |
| Concepts |
| longName |
Uberon |
| conceptCode |
C190111 |
| definition |
An integrated cross-species anatomy ontology representing a variety of entities classified according to traditional anatomical criteria such as structure, function, and developmental lineage. The ontology includes comprehensive relationships to taxon-specific anatomical ontologies, allowing integration of functional, phenotype and expression data. |
| evsSource |
NCI_CONCEPT_CODE |
| primaryIndicator |
No |
| displayOrder |
1 |
|
| longName |
Identifier |
| conceptCode |
C25364 |
| definition |
One or more characters used to identify, name, or characterize the nature, properties, or contents of a thing. |
| evsSource |
NCI_CONCEPT_CODE |
| primaryIndicator |
Yes |
| displayOrder |
0 |
|
|
|
|
| ClassificationSchemes |
| publicId |
6305258 |
| version |
1 |
| longName |
TCIA (The Cancer Imaging Archive) |
| context |
CIP |
| workflowStatus |
RELEASED |
| registrationStatus |
Application |
| ClassificationSchemeItems |
| publicId |
14540938 |
| version |
1 |
| longName |
Recommended CDEs |
| context |
CIP |
| workflowStatus |
RELEASED |
| registrationStatus |
Application |
|
|
|
| publicId |
8064110 |
| version |
1 |
| longName |
GC (General Commons) |
| context |
CRDC |
| workflowStatus |
RELEASED |
| registrationStatus |
Application |
| ClassificationSchemeItems |
| publicId |
12177497 |
| version |
1 |
| longName |
Diagnosis |
| context |
CRDC |
| workflowStatus |
RELEASED |
| registrationStatus |
Application |
|
| publicId |
14470388 |
| version |
1 |
| longName |
Imaging |
| context |
CRDC |
| workflowStatus |
RELEASED |
| registrationStatus |
Application |
|
|
|
| publicId |
10429357 |
| version |
1 |
| longName |
GDC (Genomic Data Commons) |
| context |
CRDC |
| workflowStatus |
DRAFT NEW |
| registrationStatus |
Application |
| ClassificationSchemeItems |
| publicId |
14506028 |
| version |
1 |
| longName |
Candidate New GDC CDEs |
| context |
CRDC |
| workflowStatus |
DRAFT NEW |
| registrationStatus |
Application |
|
|
|
| publicId |
10466051 |
| version |
1 |
| longName |
All CRDC Standard CDEs |
| context |
CRDC |
| workflowStatus |
RELEASED |
| registrationStatus |
Application |
| ClassificationSchemeItems |
| publicId |
10466054 |
| version |
1 |
| longName |
Diagnosis |
| context |
CRDC |
| workflowStatus |
RELEASED |
| registrationStatus |
Application |
|
|
|
| publicId |
11518160 |
| version |
1 |
| longName |
CTDC (Clinical and Translational Data Commons) |
| context |
CRDC |
| workflowStatus |
RELEASED |
| registrationStatus |
Application |
| ClassificationSchemeItems |
| publicId |
16075375 |
| version |
1 |
| longName |
CIDC Model |
| context |
CRDC |
| workflowStatus |
RELEASED |
| registrationStatus |
Application |
|
| publicId |
16075984 |
| version |
1 |
| longName |
Disease |
| context |
CRDC |
| workflowStatus |
RELEASED |
| registrationStatus |
Application |
|
|
|
| publicId |
15020003 |
| version |
1 |
| longName |
PSDC (Population Science Data Commons) |
| context |
CRDC |
| workflowStatus |
RELEASED |
| registrationStatus |
Application |
| ClassificationSchemeItems |
| publicId |
16922257 |
| version |
1 |
| longName |
Participant |
| context |
CRDC |
| workflowStatus |
RELEASED |
| registrationStatus |
Application |
|
|
|
| publicId |
15020047 |
| version |
1 |
| longName |
PDC (Proteomic Data Commons) |
| context |
CRDC |
| workflowStatus |
RELEASED |
| registrationStatus |
Application |
| ClassificationSchemeItems |
| publicId |
15112978 |
| version |
1 |
| longName |
Demographics |
| context |
CRDC |
| workflowStatus |
RELEASED |
| registrationStatus |
Application |
|
|
|
| publicId |
15020048 |
| version |
1 |
| longName |
ICDC (Integrated Canine Data Commons) |
| context |
CRDC |
| workflowStatus |
RELEASED |
| registrationStatus |
Application |
| ClassificationSchemeItems |
| publicId |
15020057 |
| version |
1 |
| longName |
Clinical |
| context |
CRDC |
| workflowStatus |
RELEASED |
| registrationStatus |
Application |
|
|
|
| publicId |
15103644 |
| version |
1 |
| longName |
CRDC Submission Model |
| context |
CRDC |
| workflowStatus |
DRAFT NEW |
| registrationStatus |
Application |
| ClassificationSchemeItems |
| publicId |
15105437 |
| version |
1 |
| longName |
Subject |
| context |
CRDC |
| workflowStatus |
RELEASED |
| registrationStatus |
Application |
|
|
|
| publicId |
15711259 |
| version |
1 |
| longName |
RCI (Rare Cancer Initiative) |
| context |
Pediatric Cancer |
| workflowStatus |
RELEASED |
| registrationStatus |
Application |
| ClassificationSchemeItems |
| publicId |
15714303 |
| version |
1 |
| longName |
Follow Up |
| context |
Pediatric Cancer |
| workflowStatus |
RELEASED |
| registrationStatus |
Application |
|
|
|
| publicId |
17012038 |
| version |
1 |
| longName |
IDC (Imaging Data Commons) |
| context |
CRDC |
| workflowStatus |
RELEASED |
| registrationStatus |
Application |
| ClassificationSchemeItems |
| publicId |
17012046 |
| version |
1 |
| longName |
Diagnosis |
| context |
CRDC |
| workflowStatus |
RELEASED |
| registrationStatus |
Application |
|
|
|
|
| AlternateNames |
| name |
Primary Disease Anatomic Site UBERON Identifier |
| type |
CRDC Alt Name |
| context |
CRDC |
|
| name |
primary_site |
| type |
GC Alt Name |
| context |
CRDC |
|
| name |
primary_site |
| type |
GDC Alt Name |
| context |
CRDC |
|
| name |
primary_site |
| type |
PDC Alt Name |
| context |
CRDC |
|
| name |
primary_site |
| type |
CRDC Model Alt Name |
| context |
CRDC |
|
| name |
primary_disease_site |
| type |
CTDC Alt Name |
| context |
CRDC |
|
| name |
diagnosis |
| type |
CTDC Table |
| context |
CRDC |
|
| name |
Primary Site |
| type |
TCIA Alt Name |
| context |
CIP |
|
| name |
Primary disease site |
| type |
CIDC Alt Name |
| context |
CRDC |
|
| name |
primary_site |
| type |
GDC Alt Name |
| context |
GDC |
|
| name |
tissue_or_organ_of_origin |
| type |
GDC Alt Name |
| context |
GDC |
|
| name |
cancer_diagnosis_primary_site |
| type |
PSDC Alt Name |
| context |
CRDC |
|
| name |
Participant |
| type |
PSDC Table |
| context |
CRDC |
|
| name |
primary_site |
| type |
IDC Alt Name |
| context |
CRDC |
|
| name |
disease |
| type |
CIDC Table |
| context |
CRDC |
|
|
| ReferenceDocuments |
| documentName |
PQT |
| documentText |
Disease Primary Site Uberon ID |
| documentType |
Preferred Question Text |
| url |
|
| context |
CRDC |
|
| documentName |
CRDC Instruction |
| documentText |
1. Go to https://www.ebi.ac.uk/ols4/ontologies/uberon
2. Use the search field to search for your term.
3. Use the Copy button at the top of the search results to copy the Uberon ID. |
| documentType |
Instructions |
| url |
|
| context |
CRDC |
|
|
|