DataElement
publicId 12445832
version 1
longName Specimen Material Category
shortName 11253405v1.00:12438805v1.00
definition The biospecimen grouping which describes the kind of material that forms the sample.
context CRDC
origin CDS:Cancer Data Service
workflowStatus RELEASED
registrationStatus Standard
latestVersionIndicator Yes
beginDate 2023-01-25
endDate
changeDescription
administrativeNotes 3/11/25 Added CRDC alts, CSI, and promoted RS from Appl to Standard. This CDE was already Released. mr; 3/11/25 Removed 'Analyte' PV since have not been able to confirm a node use case. All other PVs are types of analytes, therefore Analyte does not fit here. mr; 11/14/24 Added C3DC alts, CSI, Table per C3DC New Variables xls. mr; 11/12/24 To clarify where the extra PVs came from: The CDS actual values are in a tsv file called sample.sample_type. mr 10/29/24 Added 7 PVs per CDS actual data counts. mr; 10/9/24 corrected typo in CDE LN to remove redundant "biospecimen". jk; 2/6/24 Added CDS alt def and CSI. BF; 1/26/24 Upd VD origin to CDS, and swapped out a postcoordinated PV for a precoordinated, semantically equivalent, since concept PV. mr; 12/27/23 Removed "Other" PV per Nov 2023 PCDC-U of Chicago/Mei Li review. This CDE is text component of Uberon terms. mr; 9/1/23 upd Origin to reflect HTAN/CDS source. jk; 4/6/23 Added PCDC parent CSI. mr; 3/1/23 Edited CDS alt name to sample type. mr; 2/1/23 Per Amanda's 1/31/23 email, CDE released for CDS use. jk 1/25/23 created for HTAN content being submitted to CRDC CDS based on 1/24/23 meeting. HTAN PVs added as alternate VMs. jk
unresolvedIssues
deletedIndicator No
createdBy JKNABLE
dateCreated 2023-01-25
modifiedBy SOKKERL
dateModified 2025-05-29
DataElementConcept
publicId 11253405
version 1
longName Specimen Material
shortName 2859635v1.00:2223243v1.00
definition Any material sample taken from a biological entity for testing, diagnostic, propagation, treatment or research purposes, including a sample obtained from a living organism or taken from the biological object after halting of all its life functions. Biospecimen can contain one or more components including but not limited to cellular molecules, cells, tissues, organs, body fluids, embryos, and body excretory products.:The tangible substance that goes into the makeup of a physical object.
context CRDC
origin CRDC:Cancer Research Data Commons
workflowStatus RELEASED
registrationStatus Application
latestVersionIndicator Yes
beginDate 2022-09-15
endDate
changeDescription
administrativeNotes 2/20/24 AI released per SME/Amanda Bell approval.ls2/1/23 released for reuse in CDS CDE. jk; 11/28/22 Changed property from Type to Material. mr; 11/17/22 Approved by Wendy, used in a CRDC DSS Standard, updated WF/RS to Released/Qualified per CRDC DSS. jk; 9/15/22 Created for CRDC per RFC12. mr;
unresolvedIssues
deletedIndicator No
createdBy COLBERTM
dateCreated 2022-09-15
modifiedBy SOKKERL
dateModified 2024-02-20
ObjectClass
publicId 2859635
version 1
longName Biospecimen
shortName C70699
definition Any material sample taken from a biological entity for testing, diagnostic, propagation, treatment or research purposes, including a sample obtained from a living organism or taken from the biological object after halting of all its life functions. Biospecimen can contain one or more components including but not limited to cellular molecules, cells, tissues, organs, body fluids, embryos, and body excretory products.
context NCIP
origin NCI Thesaurus
workflowStatus RELEASED
registrationStatus Application
latestVersionIndicator Yes
beginDate 2009-04-01
endDate
changeDescription
administrativeNotes
unresolvedIssues
deletedIndicator No
createdBy UMLLOADER_TAVERNA
dateCreated 2009-04-01
modifiedBy ONEDATA
dateModified 2009-04-01
Concepts
longName Biospecimen
conceptCode C70699
definition Any material sample taken from a biological entity for testing, diagnostic, propagation, treatment or research purposes, including a sample obtained from a living organism or taken from the biological object after halting of all its life functions. Biospecimen can contain one or more components including but not limited to cellular molecules, cells, tissues, organs, body fluids, embryos, and body excretory products.
evsSource NCI_CONCEPT_CODE
primaryIndicator Yes
displayOrder 0
Property
publicId 2514542
version 1
longName Material
shortName C48187
definition The tangible substance that goes into the makeup of a physical object.
context NCIP
origin NCI Thesaurus
workflowStatus RELEASED
registrationStatus Application
latestVersionIndicator Yes
beginDate 2006-08-22
endDate
changeDescription
administrativeNotes
unresolvedIssues
deletedIndicator No
createdBy AYANLOWA
dateCreated 2006-08-22
modifiedBy ONEDATA
dateModified 2006-08-22
Concepts
longName Material
conceptCode C48187
definition The tangible substance that goes into the makeup of a physical object.
evsSource NCI_CONCEPT_CODE
primaryIndicator Yes
displayOrder 0
ConceptualDomain
publicId 2008547
version 1
longName Specimen Characteristics
shortName SPEC_CHAR
definition attributes of a patient's laboratory sample, including the source, condition, and fixative.
context CTEP
origin
workflowStatus RELEASED
registrationStatus Application
latestVersionIndicator Yes
beginDate 2002-12-19
endDate
changeDescription
administrativeNotes
unresolvedIssues
deletedIndicator No
createdBy MSUPLEY
dateCreated 2002-12-19
modifiedBy SBR
dateModified 2003-10-29
ValueDomain
publicId 12438805
version 1
longName Biospecimen Category
shortName 12438805v1.00
definition Any material sample taken from a biological entity for testing, diagnostic, propagation, treatment or research purposes, including a sample obtained from a living organism or taken from the biological object after halting of all its life functions. Biospecimen can contain one or more components including but not limited to cellular molecules, cells, tissues, organs, body fluids, embryos, and body excretory products._A grouping of items based on some commonality or by user defined characteristics.
context CRDC
type Enumerated
dataType CHARACTER
minLength
maxLength 50
minValue
maxValue
decimalPlace
origin CDS:Cancer Data Service
workflowStatus RELEASED
registrationStatus Application
latestVersionIndicator Yes
beginDate 2023-01-25
endDate
changeDescription
administrativeNotes 3/11/25 Removed 'Analyte' PV since have not been able to confirm a node use case. All other PVs are types of analytes, therefore Analyte does not seem to belong. mr; 10/29/24 Added 7 PVs per CDA actual data counts. 10/10/24 Added PVs Unk, NR for C3DC. mr; 1/26/24 Upd Origin to CDS and to swap concept for semantically equivalent precoordinated in one PV. mr; 4/3/23 Upd qualifier to C70699 for consistency w CRDC best practices. Added origin = CRDC. mr; 2/1/23 released per CDS SME (Amanda)'s email 1/31/23. jk
unresolvedIssues
deletedIndicator No
createdBy JKNABLE
dateCreated 2023-01-25
modifiedBy COLBERTM
dateModified 2025-03-11
PermissibleValues
publicId 9110687
value Blood
valueDescription
origin
beginDate 2023-01-25
endDate
deletedIndicator No
createdBy JKNABLE
dateCreated 2023-01-25
modifiedBy JKNABLE
dateModified 2023-01-25
ValueMeaning
publicId 3111300
version 1
longName Blood
shortName 3111300
definition Blood circulating throughout the body.
context NCIP
origin
workflowStatus RELEASED
registrationStatus Application
latestVersionIndicator Yes
beginDate 2010-06-18
endDate
changeDescription
administrativeNotes
unresolvedIssues
deletedIndicator No
createdBy REEVESD
dateCreated 2010-06-18
modifiedBy ZHWENDY
dateModified 2024-04-15
Concepts
longName Blood
conceptCode C12434
definition A liquid tissue; its major function is to transport oxygen throughout the body. It also supplies the tissues with nutrients, removes waste products, and contains various components of the immune system defending the body against infection. Several hormones also travel in the blood.
evsSource NCI_CONCEPT_CODE
primaryIndicator Yes
displayOrder 0
Designations
languageName ENGLISH
name Peripheral Blood
type Synonym
context COG
id 1C6D5D2A-C849-A37C-E050-BB89AD433C88
createdBy Dianne Reeves
dateCreated 2015-08-03
modifiedBy ONEDATA
dateModified 2015-08-03
languageName ENGLISH
name Research blood collection
type VM Alt Name
context DCP
id DED6273D-011F-221E-E053-731AD00A8FB3
createdBy Cassandra Lohnes
dateCreated 2022-05-16
modifiedBy CLOHNES
dateModified 2022-05-16
languageName ENGLISH
name Blood Biospecimen Type
type HTAN Alt Name
context HTAN
id F319410A-154F-727D-E053-731AD00A58F0
createdBy Janice Knable
dateCreated 2023-01-25
modifiedBy JKNABLE
dateModified 2023-01-25
languageName ENGLISH
name BLOOD=Blood
type PCORNet Name
context CDMH
id 1626A8DA-B58A-1CB7-E063-731AD00A4112
createdBy Xiaoyun Zhang
dateCreated 2024-04-15
modifiedBy ZHWENDY
dateModified 2024-04-15
languageName ENGLISH
name PERIPHERAL BLOOD=Peripheral Blood
type PCORNet Name
context CDMH
id 1626AE1F-005B-1D98-E063-731AD00A975B
createdBy Xiaoyun Zhang
dateCreated 2024-04-15
modifiedBy ZHWENDY
dateModified 2024-04-15
publicId 9110688
value Ascites
valueDescription
origin
beginDate 2023-01-25
endDate
deletedIndicator No
createdBy JKNABLE
dateCreated 2023-01-25
modifiedBy JKNABLE
dateModified 2023-01-25
ValueMeaning
publicId 5446318
version 1
longName Ascites
shortName 5446318
definition The accumulation of fluid in the peritoneal cavity, which may be serous, hemorrhagic, or the result of tumor metastasis to the peritoneum.
context NCIP
origin
workflowStatus RELEASED
registrationStatus Application
latestVersionIndicator Yes
beginDate 2016-09-02
endDate
changeDescription
administrativeNotes
unresolvedIssues
deletedIndicator No
createdBy COOPERM
dateCreated 2016-09-02
modifiedBy ZHWENDY
dateModified 2024-04-15
Concepts
longName Peritoneal Effusion
conceptCode C2885
definition The accumulation of fluid in the peritoneal cavity, which may be serous, hemorrhagic, or the result of tumor metastasis to the peritoneum.
evsSource NCI_CONCEPT_CODE
primaryIndicator Yes
displayOrder 0
Designations
languageName ENGLISH
name Ascites Biospecimen Type
type HTAN Alt Name
context HTAN
id F31891BC-3AEB-4F39-E053-731AD00A6FAA
createdBy Janice Knable
dateCreated 2023-01-25
modifiedBy JKNABLE
dateModified 2023-01-25
languageName ENGLISH
name PERITONEAL FLUID/ASCITES=Peritoneal Fluid/Ascites
type PCORNet Name
context CDMH
id 1626A8DA-B593-1CB7-E063-731AD00A4112
createdBy Xiaoyun Zhang
dateCreated 2024-04-15
modifiedBy ZHWENDY
dateModified 2024-04-15
publicId 9110689
value Bone Marrow
valueDescription
origin
beginDate 2023-01-25
endDate
deletedIndicator No
createdBy JKNABLE
dateCreated 2023-01-25
modifiedBy JKNABLE
dateModified 2023-01-25
ValueMeaning
publicId 3227901
version 1
longName Bone Marrow
shortName 3227901
definition The soft, sponge-like tissue in the center of bones that produces white blood cells, red blood cells, and platelets.
context NCIP
origin
workflowStatus RELEASED
registrationStatus Application
latestVersionIndicator Yes
beginDate 2011-04-14
endDate
changeDescription
administrativeNotes
unresolvedIssues
deletedIndicator No
createdBy REEVESD
dateCreated 2011-04-14
modifiedBy KUMMEROA
dateModified 2025-02-11
Concepts
longName Bone Marrow
conceptCode C12431
definition The tissue occupying the spaces of bone. It consists of blood vessel sinuses and a network of hematopoietic cells which give rise to the red cells, white cells, and megakaryocytes.
evsSource NCI_CONCEPT_CODE
primaryIndicator Yes
displayOrder 0
Designations
languageName ENGLISH
name Bone Marrow Biospecimen Type
type HTAN Alt Name
context HTAN
id F3194520-3431-7307-E053-731AD00A1A58
createdBy Janice Knable
dateCreated 2023-01-25
modifiedBy JKNABLE
dateModified 2023-01-25
languageName ENGLISH
name BONE MARROW=Bone marrow
type PCORNet Name
context CDMH
id 1626A8DA-B586-1CB7-E063-731AD00A4112
createdBy Xiaoyun Zhang
dateCreated 2024-04-15
modifiedBy ZHWENDY
dateModified 2024-04-15
languageName ENGLISH
name Bone marrow metastasis
type VM Alt Name
context COG
id 2DE50606-103D-0C04-E063-731AD00AA1E3
createdBy Angela Kummerow
dateCreated 2025-02-11
modifiedBy KUMMEROA
dateModified 2025-02-11
publicId 9110690
value Cells
valueDescription
origin
beginDate 2023-01-25
endDate
deletedIndicator No
createdBy JKNABLE
dateCreated 2023-01-25
modifiedBy JKNABLE
dateModified 2023-01-25
ValueMeaning
publicId 3111299
version 1
longName Cell
shortName 3111299
definition The smallest units of living structure capable of independent existence, composed of a membrane-enclosed mass of protoplasm and containing a nucleus or nucleoid.
context NCIP
origin
workflowStatus RELEASED
registrationStatus Application
latestVersionIndicator Yes
beginDate 2010-06-18
endDate
changeDescription
administrativeNotes
unresolvedIssues
deletedIndicator No
createdBy REEVESD
dateCreated 2010-06-18
modifiedBy ZHWENDY
dateModified 2024-04-22
Concepts
longName Cell
conceptCode C12508
definition The smallest units of living structure capable of independent existence, composed of a membrane-enclosed mass of protoplasm and containing a nucleus or nucleoid.
evsSource NCI_CONCEPT_CODE
primaryIndicator Yes
displayOrder 0
Designations
languageName ENGLISH
name Cells Biospecimen Type
type HTAN Alt Name
context HTAN
id F3194EDD-474A-7458-E053-731AD00A3B3D
createdBy Janice Knable
dateCreated 2023-01-25
modifiedBy JKNABLE
dateModified 2023-01-25
languageName ENGLISH
name {cells}=cells
type PCORNet Name
context CDMH
id 16B1BF4F-6AEE-5777-E063-731AD00A3B99
createdBy Xiaoyun Zhang
dateCreated 2024-04-22
modifiedBy ZHWENDY
dateModified 2024-04-22
publicId 9110691
value Stool
valueDescription
origin
beginDate 2023-01-25
endDate
deletedIndicator No
createdBy JKNABLE
dateCreated 2023-01-25
modifiedBy JKNABLE
dateModified 2023-01-25
ValueMeaning
publicId 2582195
version 1
longName Feces
shortName 2582195v1.00
definition The material discharged from the bowel during defecation. It consists of undigested food, intestinal mucus, epithelial cells, and bacteria.
context NCIP
origin
workflowStatus RELEASED
registrationStatus Application
latestVersionIndicator Yes
beginDate 2006-11-27
endDate
changeDescription
administrativeNotes
unresolvedIssues
deletedIndicator No
createdBy CURTIST
dateCreated 2006-11-27
modifiedBy COLBERTM
dateModified 2024-10-30
Concepts
longName Feces
conceptCode C13234
definition The material discharged from the bowel during defecation. It consists of undigested food, intestinal mucus, epithelial cells, and bacteria.
evsSource NCI_CONCEPT_CODE
primaryIndicator Yes
displayOrder 0
Designations
languageName ENGLISH
name Stool
type VM Alt Name
context PMI
id DDE5A4E5-3C19-5E37-E053-731AD00A299D
createdBy Xiaoyun Zhang
dateCreated 2022-05-04
modifiedBy ZHWENDY
dateModified 2022-05-04
languageName ENGLISH
name Stool Biospecimen Type
type HTAN Alt Name
context HTAN
id F3195E32-6858-796C-E053-731AD00A968A
createdBy Janice Knable
dateCreated 2023-01-25
modifiedBy JKNABLE
dateModified 2023-01-25
languageName ENGLISH
name Stool
type VM Alt Name
context COG
id F7E411C0-3D8F-6F36-E053-731AD00A116A
createdBy Angela Kummerow
dateCreated 2023-03-27
modifiedBy KUMMEROA
dateModified 2023-03-27
languageName ENGLISH
name Stool
type Manually-curated
context NCIP
id 01E37F60-3560-2C13-E063-731AD00A5342
createdBy Gwen Deen
dateCreated 2023-08-01
modifiedBy GDEEN
dateModified 2023-08-01
languageName ENGLISH
name Optional Stool
type VM Alt Name
context DCP
id 0E99C1AA-99BB-4EE3-E063-731AD00A2968
createdBy Mounika Maddineni
dateCreated 2024-01-10
modifiedBy MMADDINENI
dateModified 2024-01-10
languageName ENGLISH
name STOOL=Stool
type PCORNet Name
context CDMH
id 1626A25A-E2E3-1BA9-E063-731AD00AAB5F
createdBy Xiaoyun Zhang
dateCreated 2024-04-15
modifiedBy ZHWENDY
dateModified 2024-04-15
languageName ENGLISH
name Stool Sample
type C3DC Alt Name
context Pediatric Cancer
id 25B5B43E-8F69-232B-E063-731AD00ABD53
createdBy Maureen Ryan
dateCreated 2024-10-30
modifiedBy COLBERTM
dateModified 2024-10-30
publicId 9110692
value Body Fluid or Substance
valueDescription
origin
beginDate 2023-01-25
endDate
deletedIndicator No
createdBy JKNABLE
dateCreated 2023-01-25
modifiedBy COLBERTM
dateModified 2024-10-29
ValueMeaning
publicId 3212369
version 1
longName Body Fluid or Substance
shortName 3212369
definition Liquid and semi liquid substances produced by living organisms to fulfill specific functions or excreted as waste; does not include hormones or enzymes.
context NCIP
origin
workflowStatus RELEASED
registrationStatus Application
latestVersionIndicator Yes
beginDate 2011-03-29
endDate
changeDescription
administrativeNotes
unresolvedIssues
deletedIndicator No
createdBy REEVESD
dateCreated 2011-03-29
modifiedBy JKNABLE
dateModified 2023-01-25
Concepts
longName Body Fluid or Substance
conceptCode C13236
definition Material produced by living organisms; it can be a necessary constituent of, or product of an organismal process.
evsSource NCI_CONCEPT_CODE
primaryIndicator Yes
displayOrder 0
Designations
languageName ENGLISH
name Fluids Biospecimen Type
type HTAN Alt Name
context HTAN
id F3194EDD-474D-7458-E053-731AD00A3B3D
createdBy Janice Knable
dateCreated 2023-01-25
modifiedBy JKNABLE
dateModified 2023-01-25
publicId 9110694
value Sputum
valueDescription
origin
beginDate 2023-01-25
endDate
deletedIndicator No
createdBy JKNABLE
dateCreated 2023-01-25
modifiedBy JKNABLE
dateModified 2023-01-25
ValueMeaning
publicId 2912067
version 1
longName Sputum
shortName 2912067
definition Material containing mucus, cellular debris, microorganisms and sometimes blood or pus. It is ejected through the mouth from the lungs, bronchi, and trachea.
context NCIP
origin
workflowStatus RELEASED
registrationStatus Application
latestVersionIndicator Yes
beginDate 2009-06-30
endDate
changeDescription
administrativeNotes
unresolvedIssues
deletedIndicator No
createdBy MAESKEB
dateCreated 2009-06-30
modifiedBy JKNABLE
dateModified 2023-01-25
Concepts
longName Sputum
conceptCode C13278
definition Material containing mucus, cellular debris, microorganisms and sometimes blood or pus. It is ejected through the mouth from the lungs, bronchi, and trachea.
evsSource NCI_CONCEPT_CODE
primaryIndicator Yes
displayOrder 0
Designations
languageName ENGLISH
name sputum
type Sentinel Name
context CDMH
id 72F56AD4-AB91-1C44-E053-F662850A4E85
createdBy Gwen Hartley Deen
dateCreated 2018-08-08
modifiedBy ONEDATA
dateModified 2018-08-08
languageName ENGLISH
name Sputum
type VM Alt Name
context Theradex
id AAE48B32-CEE8-09CE-E053-4EBD850A261C
createdBy Tina Taylor
dateCreated 2020-07-20
modifiedBy ONEDATA
dateModified 2020-07-20
languageName ENGLISH
name Sputum Biospecimen Type
type HTAN Alt Name
context HTAN
id F3195A3D-22B9-78FC-E053-731AD00AC234
createdBy Janice Knable
dateCreated 2023-01-25
modifiedBy JKNABLE
dateModified 2023-01-25
publicId 9110696
value Urine
valueDescription
origin
beginDate 2023-01-25
endDate
deletedIndicator No
createdBy JKNABLE
dateCreated 2023-01-25
modifiedBy JKNABLE
dateModified 2023-01-25
ValueMeaning
publicId 3111296
version 1
longName Urine
shortName 3111296
definition The fluid that is excreted by the kidneys. It is stored in the bladder and discharged through the urethra.
context NCIP
origin
workflowStatus RELEASED
registrationStatus Application
latestVersionIndicator Yes
beginDate 2010-06-18
endDate
changeDescription
administrativeNotes
unresolvedIssues
deletedIndicator No
createdBy REEVESD
dateCreated 2010-06-18
modifiedBy ZHWENDY
dateModified 2024-04-15
Concepts
longName Urine
conceptCode C13283
definition The fluid that is excreted by the kidneys. It is stored in the bladder and discharged through the urethra.
evsSource NCI_CONCEPT_CODE
primaryIndicator Yes
displayOrder 0
Designations
languageName ENGLISH
name Urine
type VM Alt Name
context Theradex
id 40E590FB-DAB2-3909-E053-F662850A3099
createdBy Tina Taylor
dateCreated 2016-11-10
modifiedBy ONEDATA
dateModified 2016-11-10
languageName ENGLISH
name urine
type Sentinel Name
context CDMH
id 72F56AD4-AB97-1C44-E053-F662850A4E85
createdBy Gwen Hartley Deen
dateCreated 2018-08-08
modifiedBy ONEDATA
dateModified 2018-08-08
languageName ENGLISH
name Urine Sample
type VM Alt Name
context DCP
id 8DB854F8-A93C-51DC-E053-F662850A3FDE
createdBy Wenli Zhang
dateCreated 2019-07-15
modifiedBy ONEDATA
dateModified 2019-07-15
languageName ENGLISH
name Urine Biospecimen Type
type HTAN Alt Name
context HTAN
id F3196389-2C69-7A52-E053-731AD00A2B90
createdBy Janice Knable
dateCreated 2023-01-25
modifiedBy JKNABLE
dateModified 2023-01-25
languageName ENGLISH
name URINE=Urine
type PCORNet Name
context CDMH
id 16269E4D-B489-1AFD-E063-731AD00A17FA
createdBy Xiaoyun Zhang
dateCreated 2024-04-15
modifiedBy ZHWENDY
dateModified 2024-04-15
publicId 9110702
value Tissue
valueDescription
origin
beginDate 2023-01-25
endDate
deletedIndicator No
createdBy JKNABLE
dateCreated 2023-01-25
modifiedBy JKNABLE
dateModified 2023-01-25
ValueMeaning
publicId 12445825
version 1
longName Tissue
shortName 12445825v1.00
definition An anatomical structure consisting of similarly specialized cells and intercellular matrix, aggregated according to genetically determined spatial relationships, performing a specific function.
context NCIP
origin
workflowStatus RELEASED
registrationStatus Application
latestVersionIndicator Yes
beginDate 2023-01-25
endDate
changeDescription
administrativeNotes
unresolvedIssues
deletedIndicator No
createdBy JKNABLE
dateCreated 2023-01-25
modifiedBy JKNABLE
dateModified 2023-01-25
Concepts
longName Tissue
conceptCode C12801
definition An anatomical structure consisting of similarly specialized cells and intercellular matrix, aggregated according to genetically determined spatial relationships, performing a specific function.
evsSource NCI_CONCEPT_CODE
primaryIndicator Yes
displayOrder 0
Designations
languageName ENGLISH
name Tissue Biospecimen Type
type HTAN Alt Name
context HTAN
id F31A0A4F-BDCD-164B-E053-731AD00AD78D
createdBy Janice Knable
dateCreated 2023-01-25
modifiedBy JKNABLE
dateModified 2023-01-25
publicId 9154405
value Mouth Rinse
valueDescription
origin
beginDate 2024-01-26
endDate
deletedIndicator No
createdBy COLBERTM
dateCreated 2024-01-26
modifiedBy COLBERTM
dateModified 2024-01-26
ValueMeaning
publicId 13374555
version 1
longName Mouth Rinse Specimen
shortName 13374555v1.00
definition A sample consisting of biological material from the buccal cavity. A collection solution is introduced into the mouth, swished around, and then collected.
context NCIP
origin
workflowStatus RELEASED
registrationStatus Application
latestVersionIndicator Yes
beginDate 2023-04-18
endDate
changeDescription
administrativeNotes
unresolvedIssues
deletedIndicator No
createdBy JKNABLE
dateCreated 2023-04-18
modifiedBy COLBERTM
dateModified 2024-10-29
Concepts
longName Mouth Rinse Specimen
conceptCode C198712
definition A sample consisting of biological material from the buccal cavity. A collection solution is introduced into the mouth, swished around, and then collected.
evsSource NCI_CONCEPT_CODE
primaryIndicator Yes
displayOrder 0
Designations
languageName ENGLISH
name Mouth Rinse Biospecimen Type
type HTAN Alt Name
context HTAN
id 2512C508-6D82-027A-E063-731AD00A536F
createdBy Bobbie Fincham
dateCreated 2024-10-22
modifiedBy FINCHAMB
dateModified 2024-10-22
languageName ENGLISH
name Mouthwash
type HTAN Alt Name
context HTAN
id 259F6ACE-4A54-03A5-E063-731AD00AB2A5
createdBy Maureen Ryan
dateCreated 2024-10-29
modifiedBy COLBERTM
dateModified 2024-10-29
publicId 9174741
value Not Reported
valueDescription
origin
beginDate 2024-10-10
endDate
deletedIndicator No
createdBy COLBERTM
dateCreated 2024-10-10
modifiedBy COLBERTM
dateModified 2024-10-10
ValueMeaning
publicId 5612322
version 1
longName Not Reported
shortName 5612322v1.00
definition Not provided or available.
context NCIP
origin
workflowStatus RELEASED
registrationStatus Application
latestVersionIndicator Yes
beginDate 2017-01-03
endDate
changeDescription
administrativeNotes 3/4/25 Added alt VM names per RFC 26 CR 1. sl; 10/10/23 changed Long Name from "Not Stated" to match NCIt Preferred name and current caDSR concept Long Name of "Not Reported" per Brenda.Janice . LS
unresolvedIssues
deletedIndicator No
createdBy ALEYR
dateCreated 2017-01-03
modifiedBy SLAUER
dateModified 2025-03-04
Concepts
longName Not Reported
conceptCode C43234
definition Not provided or available.
evsSource NCI_CONCEPT_CODE
primaryIndicator Yes
displayOrder 0
Designations
languageName ENGLISH
name Not reported
type VM Alt Name
context COG
id EDAF8130-FB17-4970-E053-731AD00A3E2F
createdBy Angela Kummerow
dateCreated 2022-11-17
modifiedBy KUMMEROA
dateModified 2022-11-17
languageName ENGLISH
name Not reported
type PCDC Alt Name
context Pediatric Cancer
id F70C841B-1BAB-3136-E053-731AD00AEC0A
createdBy Maureen Ryan
dateCreated 2023-03-16
modifiedBy COLBERTM
dateModified 2023-03-16
languageName ENGLISH
name Not Reported
type VM Alt Name
context COG
id F7E64D3D-671D-5F5B-E053-731AD00A7EA8
createdBy Angela Kummerow
dateCreated 2023-03-27
modifiedBy KUMMEROA
dateModified 2023-03-27
languageName ENGLISH
name Not reported
type Manually-curated
context NCIP
id 01E36070-B407-2894-E063-731AD00A26B9
createdBy Gwen Deen
dateCreated 2023-08-01
modifiedBy GDEEN
dateModified 2023-08-01
languageName ENGLISH
name Not Stated
type VM Alt Name
context NCIP
id 075F5912-5BB3-3B40-E063-731AD00A37FA
createdBy Lamia Sokker
dateCreated 2023-10-10
modifiedBy SOKKERL
dateModified 2023-10-10
languageName ENGLISH
name Not stated in Report
type VM Alt Name
context CCTG
id 097FC64F-5B06-6592-E063-731AD00AC610
createdBy Cassandra Lohnes
dateCreated 2023-11-06
modifiedBy CLOHNES
dateModified 2023-11-06
languageName ENGLISH
name Not Stated in Report
type OID, CCTG
context CCTG
id 09A6371C-80E0-502C-E063-731AD00A26F5
createdBy Cassandra Lohnes
dateCreated 2023-11-08
modifiedBy CLOHNES
dateModified 2023-11-08
languageName ENGLISH
name Not Reported
type CRDC Alt Name
context CRDC
id 0F53F53A-F7B0-4F25-E063-731AD00A3B14
createdBy Bobbie Fincham
dateCreated 2024-01-19
modifiedBy FINCHAMB
dateModified 2024-01-19
languageName ENGLISH
name -1
type TCIA Alt Name
context CIP
id 1F44C19A-94C2-5731-E063-731AD00AF175
createdBy Bobbie Fincham
dateCreated 2024-08-09
modifiedBy FINCHAMB
dateModified 2024-08-09
languageName ENGLISH
name Not Reported
type CDA Alt Name
context CRDC
id 2F8F12E0-3D58-33DC-E063-731AD00A3A1C
createdBy Sarah Lauer
dateCreated 2025-03-04
modifiedBy SLAUER
dateModified 2025-03-04
languageName ENGLISH
name not reported
type CDA Alt Name
context CRDC
id 2F8F12E0-3D59-33DC-E063-731AD00A3A1C
createdBy Sarah Lauer
dateCreated 2025-03-04
modifiedBy SLAUER
dateModified 2025-03-04
languageName ENGLISH
name Not Reported
type GC Alt Name
context CRDC
id 2F8F12E0-3D5A-33DC-E063-731AD00A3A1C
createdBy Sarah Lauer
dateCreated 2025-03-04
modifiedBy SLAUER
dateModified 2025-03-04
languageName ENGLISH
name Not Reported
type GDC Alt Name
context CRDC
id 2F8F12E0-3D5B-33DC-E063-731AD00A3A1C
createdBy Sarah Lauer
dateCreated 2025-03-04
modifiedBy SLAUER
dateModified 2025-03-04
languageName ENGLISH
name Not Reported
type PDC Alt Name
context CRDC
id 2F8F12E0-3D5C-33DC-E063-731AD00A3A1C
createdBy Sarah Lauer
dateCreated 2025-03-04
modifiedBy SLAUER
dateModified 2025-03-04
languageName ENGLISH
name Not Reported
type HTAN Alt Name
context HTAN
id 2F8F12E0-3D5D-33DC-E063-731AD00A3A1C
createdBy Sarah Lauer
dateCreated 2025-03-04
modifiedBy SLAUER
dateModified 2025-03-04
publicId 9174742
value Unknown
valueDescription
origin
beginDate 2024-10-10
endDate
deletedIndicator No
createdBy COLBERTM
dateCreated 2024-10-10
modifiedBy COLBERTM
dateModified 2024-10-10
ValueMeaning
publicId 2570901
version 1
longName Unknown
shortName 2570901v1.00
definition Not known, observed, recorded; or reported as unknown by the data contributor.
context NCIP
origin
workflowStatus RELEASED
registrationStatus Application
latestVersionIndicator Yes
beginDate 2004-06-21
endDate
changeDescription
administrativeNotes
unresolvedIssues
deletedIndicator No
createdBy SBR
dateCreated 2004-06-21
modifiedBy ZHWENDY
dateModified 2024-09-20
Concepts
longName Unknown
conceptCode C17998
definition Not known, observed, recorded; or reported as unknown by the data contributor.
evsSource NCI_CONCEPT_CODE
primaryIndicator Yes
displayOrder 0
Designations
languageName ENGLISH
name unknown
type FHIR US CORE Name
context CDMH
id 228E64DA-4DAD-1013-E063-731AD00ACC54
createdBy Xiaoyun Zhang
dateCreated 2024-09-20
modifiedBy ZHWENDY
dateModified 2024-09-20
publicId 9175895
value Xenograft
valueDescription
origin
beginDate 2024-10-29
endDate
deletedIndicator No
createdBy COLBERTM
dateCreated 2024-10-29
modifiedBy COLBERTM
dateModified 2024-10-29
ValueMeaning
publicId 5424196
version 1
longName Xenograft
shortName 5424196
definition The transfer of cells, tissues, or organs from a donor into a recipient of another species.
context NCIP
origin
workflowStatus RELEASED
registrationStatus Application
latestVersionIndicator Yes
beginDate 2016-08-18
endDate
changeDescription
administrativeNotes
unresolvedIssues
deletedIndicator No
createdBy COOPERM
dateCreated 2016-08-18
modifiedBy SBR
dateModified 2018-01-19
Concepts
longName Xenograft
conceptCode C12932
definition Cells, tissues, or organs from a donor that are transplanted into a recipient of another species.
evsSource NCI_CONCEPT_CODE
primaryIndicator Yes
displayOrder 0
publicId 9175896
value Skin
valueDescription
origin
beginDate 2024-10-29
endDate
deletedIndicator No
createdBy COLBERTM
dateCreated 2024-10-29
modifiedBy COLBERTM
dateModified 2024-10-29
ValueMeaning
publicId 4363644
version 1
longName Skin
shortName 4363644
definition An organ that constitutes the external surface of the body. It consists of the epidermis, dermis, and skin appendages.
context NCIP
origin
workflowStatus RELEASED
registrationStatus Application
latestVersionIndicator Yes
beginDate 2014-06-24
endDate
changeDescription
administrativeNotes
unresolvedIssues
deletedIndicator No
createdBy MAESKEB
dateCreated 2014-06-24
modifiedBy KUMMEROA
dateModified 2026-06-11
Concepts
longName Skin
conceptCode C12470
definition An organ that constitutes the external surface of the body. It consists of the epidermis, dermis, and skin appendages.
evsSource NCI_CONCEPT_CODE
primaryIndicator Yes
displayOrder 0
Designations
languageName ENGLISH
name SKIN=Skin
type PCORNet Name
context CDMH
id 1626A60F-68E0-1C6F-E063-731AD00A2F4C
createdBy Xiaoyun Zhang
dateCreated 2024-04-15
modifiedBy ZHWENDY
dateModified 2024-04-15
languageName ENGLISH
name Skin (other)
type C3D Name
context COG
id 53FD232E-6E57-3FB2-E063-731AD00AE851
createdBy Angela Kummerow
dateCreated 2026-06-11
modifiedBy KUMMEROA
dateModified 2026-06-11
publicId 9175897
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valueDescription
origin
beginDate 2024-10-29
endDate
deletedIndicator No
createdBy COLBERTM
dateCreated 2024-10-29
modifiedBy COLBERTM
dateModified 2024-10-29
ValueMeaning
publicId 4321087
version 1
longName Saliva
shortName 4321087
definition The watery fluid in the mouth made by the salivary glands. Saliva moistens food to help digestion and it helps protect the mouth against infections.
context NCIP
origin
workflowStatus RELEASED
registrationStatus Application
latestVersionIndicator Yes
beginDate 2014-05-16
endDate
changeDescription
administrativeNotes
unresolvedIssues
deletedIndicator No
createdBy COOPERM
dateCreated 2014-05-16
modifiedBy SBR
dateModified 2018-01-19
Concepts
longName Saliva
conceptCode C13275
definition The watery fluid in the mouth made by the salivary glands. Saliva moistens food to help digestion and it helps protect the mouth against infections.
evsSource NCI_CONCEPT_CODE
primaryIndicator Yes
displayOrder 0
Designations
languageName ENGLISH
name Saliva
type VM Alt Name
context Theradex
id 40E590FB-DABE-3909-E053-F662850A3099
createdBy Tina Taylor
dateCreated 2016-11-10
modifiedBy ONEDATA
dateModified 2016-11-10
publicId 9175898
value RNA
valueDescription
origin
beginDate 2024-10-29
endDate
deletedIndicator No
createdBy COLBERTM
dateCreated 2024-10-29
modifiedBy COLBERTM
dateModified 2024-10-29
ValueMeaning
publicId 2581712
version 1
longName Ribonucleic Acid
shortName 2581712v1.00
definition Single-stranded long chain of nucleotides containing ribose. It is the end product of DNA transcription by the enzyme RNA polymerase. It is essential in protein synthesis.
context NCIP
origin
workflowStatus RELEASED
registrationStatus Application
latestVersionIndicator Yes
beginDate 2006-11-10
endDate
changeDescription
administrativeNotes
unresolvedIssues
deletedIndicator No
createdBy UMLLOADER_CGOM
dateCreated 2006-10-20
modifiedBy GDEEN
dateModified 2023-08-01
Concepts
longName Ribonucleic Acid
conceptCode C812
definition Single-stranded long chain of nucleotides containing ribose. It is the end product of DNA transcription by the enzyme RNA polymerase. It is essential in protein synthesis.
evsSource NCI_CONCEPT_CODE
primaryIndicator Yes
displayOrder 0
Designations
languageName ENGLISH
name RNA
type UML Value Name
context NCIP
id 3C18D439-AB41-188E-E044-0003BA3F9857
createdBy Mary J Cooper
dateCreated 2007-10-09
modifiedBy ONEDATA
dateModified 2007-10-09
languageName ENGLISH
name RNA
type Manually-curated
context NCIP
id 01E51B0A-8270-7417-E063-731AD00A98D1
createdBy Gwen Deen
dateCreated 2023-08-01
modifiedBy GDEEN
dateModified 2023-08-01
publicId 9175899
value DNA
valueDescription
origin
beginDate 2024-10-29
endDate
deletedIndicator No
createdBy COLBERTM
dateCreated 2024-10-29
modifiedBy COLBERTM
dateModified 2024-10-29
ValueMeaning
publicId 2581946
version 1
longName DNA
shortName 2581946
definition A long linear double-stranded polymer formed from nucleotides attached to a deoxyribose backbone and found in the nucleus of a cell; associated with the transmission of genetic information.
context NCIP
origin
workflowStatus RELEASED
registrationStatus Application
latestVersionIndicator Yes
beginDate 2006-11-15
endDate
changeDescription
administrativeNotes
unresolvedIssues
deletedIndicator No
createdBy CURTIST
dateCreated 2006-11-15
modifiedBy DWARZEL
dateModified 2015-12-15
Concepts
longName DNA
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definition A long linear double-stranded polymer formed from nucleotides attached to a deoxyribose backbone and found in the nucleus of a cell; associated with the transmission of genetic information.
evsSource NCI_CONCEPT_CODE
primaryIndicator Yes
displayOrder 0
Designations
languageName ENGLISH
name DNA
type UML Value Name
context NCIP
id 3C18D439-AB3B-188E-E044-0003BA3F9857
createdBy Mary J Cooper
dateCreated 2007-10-09
modifiedBy ONEDATA
dateModified 2007-10-09
languageName ENGLISH
name DNA
type VM Alt Name
context Theradex
id 40F3F085-13C4-1537-E053-F662850A5014
createdBy Tina Taylor
dateCreated 2016-11-10
modifiedBy ONEDATA
dateModified 2016-11-10
publicId 9175900
value Central Nervous System
valueDescription
origin
beginDate 2024-10-29
endDate
deletedIndicator No
createdBy COLBERTM
dateCreated 2024-10-29
modifiedBy COLBERTM
dateModified 2024-10-29
ValueMeaning
publicId 2558476
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longName Central Nervous System
shortName 2558476
definition The main information-processing organs of the nervous system, consisting of the brain, spinal cord, and meninges.
context NCIP
origin
workflowStatus RELEASED
registrationStatus Application
latestVersionIndicator Yes
beginDate 2002-02-13
endDate
changeDescription
administrativeNotes
unresolvedIssues
deletedIndicator No
createdBy SBR
dateCreated 2002-02-13
modifiedBy KUMMEROA
dateModified 2024-05-31
Concepts
longName Central Nervous System
conceptCode C12438
definition The part of the nervous system that consists of the brain, spinal cord, and meninges.
evsSource NCI_CONCEPT_CODE
primaryIndicator Yes
displayOrder 0
Designations
languageName ENGLISH
name CNS
type VM Alt Name
context ECOG-ACRIN
id FF6DA6A9-4747-B3BF-E040-BB89AD436D6C
createdBy Stephanie Rouillard
dateCreated 2014-07-30
modifiedBy ONEDATA
dateModified 2014-07-30
languageName ENGLISH
name CNS
type VM Alt Name
context COG
id E3C86D03-31DD-656B-E053-731AD00A72DC
createdBy Angela Kummerow
dateCreated 2022-07-14
modifiedBy KUMMEROA
dateModified 2022-07-14
languageName ENGLISH
name 3=Central Nervous System
type VM Alt Name
context NCIP
id 19AE9A80-8110-3EA5-E063-731AD00A359B
createdBy Angela Kummerow
dateCreated 2024-05-30
modifiedBy KUMMEROA
dateModified 2024-05-30
languageName ENGLISH
name Central Nervous System
type VM Alt Name
context NCIP
id 19C09BEE-425A-52A2-E063-731AD00A799C
createdBy Angela Kummerow
dateCreated 2024-05-31
modifiedBy KUMMEROA
dateModified 2024-05-31
languageName ENGLISH
name 3
type VM Alt Name
context NCIP
id 19C09BEE-425B-52A2-E063-731AD00A799C
createdBy Angela Kummerow
dateCreated 2024-05-31
modifiedBy KUMMEROA
dateModified 2024-05-31
publicId 9175901
value Cell Line
valueDescription
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beginDate 2024-10-29
endDate
deletedIndicator No
createdBy COLBERTM
dateCreated 2024-10-29
modifiedBy COLBERTM
dateModified 2024-10-29
ValueMeaning
publicId 3081866
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longName Cell Line
shortName 3081866
definition A permanently established cell culture that will proliferate indefinitely given appropriate fresh medium and space.
context NCIP
origin
workflowStatus RELEASED
registrationStatus Application
latestVersionIndicator Yes
beginDate 2010-05-04
endDate
changeDescription
administrativeNotes
unresolvedIssues
deletedIndicator No
createdBy REEVESD
dateCreated 2010-05-04
modifiedBy SBR
dateModified 2018-01-19
Concepts
longName Cell Line
conceptCode C16403
definition A permanently established cell culture that will proliferate indefinitely given appropriate fresh medium and space.
evsSource NCI_CONCEPT_CODE
primaryIndicator Yes
displayOrder 0
ConceptualDomain
publicId 2008547
version 1
longName Specimen Characteristics
shortName SPEC_CHAR
definition attributes of a patient's laboratory sample, including the source, condition, and fixative.
context CTEP
origin
workflowStatus RELEASED
registrationStatus Application
latestVersionIndicator Yes
beginDate 2002-12-19
endDate
changeDescription
administrativeNotes
unresolvedIssues
deletedIndicator No
createdBy MSUPLEY
dateCreated 2002-12-19
modifiedBy SBR
dateModified 2003-10-29
RepresentationTerm
publicId 13300646
version 1
longName Biospecimen Category
shortName 13300646v1.00
definition Any material sample taken from a biological entity for testing, diagnostic, propagation, treatment or research purposes, including a sample obtained from a living organism or taken from the biological object after halting of all its life functions. Biospecimen can contain one or more components including but not limited to cellular molecules, cells, tissues, organs, body fluids, embryos, and body excretory products._A grouping of items based on some commonality or by user defined characteristics.
context NCIP
origin
workflowStatus RELEASED
registrationStatus Application
latestVersionIndicator Yes
beginDate 2023-04-03
endDate
changeDescription
administrativeNotes
unresolvedIssues
deletedIndicator No
createdBy COLBERTM
dateCreated 2023-04-03
modifiedBy COLBERTM
dateModified 2023-04-03
Concepts
longName Biospecimen
conceptCode C70699
definition Any material sample taken from a biological entity for testing, diagnostic, propagation, treatment or research purposes, including a sample obtained from a living organism or taken from the biological object after halting of all its life functions. Biospecimen can contain one or more components including but not limited to cellular molecules, cells, tissues, organs, body fluids, embryos, and body excretory products.
evsSource NCI_CONCEPT_CODE
primaryIndicator No
displayOrder 1
longName Category
conceptCode C25372
definition A grouping of items based on some commonality or by user defined characteristics.
evsSource NCI_CONCEPT_CODE
primaryIndicator Yes
displayOrder 0
ClassificationSchemes
publicId 7576399
version 1
longName HTAN Biospecimen CDEs
context HTAN
workflowStatus RELEASED
registrationStatus Application
ClassificationSchemeItems
publicId 7577840
version 1
longName Tier 2 Assay-specific
context HTAN
workflowStatus RELEASED
registrationStatus Application
publicId 8064110
version 1
longName GC (General Commons)
context CRDC
workflowStatus RELEASED
registrationStatus Application
ClassificationSchemeItems
publicId 12177460
version 1
longName Sample
context CRDC
workflowStatus RELEASED
registrationStatus Application
publicId 14470388
version 1
longName Imaging
context CRDC
workflowStatus RELEASED
registrationStatus Application
publicId 10466051
version 1
longName All CRDC Standard CDEs
context CRDC
workflowStatus RELEASED
registrationStatus Application
ClassificationSchemeItems
publicId 10466053
version 1
longName Specimen
context CRDC
workflowStatus RELEASED
registrationStatus Application
publicId 11518160
version 1
longName CTDC (Clinical and Translational Data Commons)
context CRDC
workflowStatus RELEASED
registrationStatus Application
ClassificationSchemeItems
publicId 14413707
version 1
longName CTDC Model
context CRDC
workflowStatus RELEASED
registrationStatus Application
publicId 14413713
version 1
longName Biospecimen
context CRDC
workflowStatus RELEASED
registrationStatus Application
publicId 12173174
version 1
longName PCDC (Pediatric Cancer Data Commons Aggregated Dictionary)
context Pediatric Cancer
workflowStatus RELEASED
registrationStatus Application
ClassificationSchemeItems
publicId 12173177
version 1
longName Testing
context Pediatric Cancer
workflowStatus RELEASED
registrationStatus Application
publicId 12173192
version 1
longName Laboratory Test
context Pediatric Cancer
workflowStatus RELEASED
registrationStatus Application
publicId 15180603
version 1
longName C3DC (Childhood Cancer Clinical Data Commons)
context Pediatric Cancer
workflowStatus RELEASED
registrationStatus Application
ClassificationSchemeItems
publicId 15180605
version 1
longName Testing
context Pediatric Cancer
workflowStatus RELEASED
registrationStatus Application
publicId 15180607
version 1
longName Laboratory Test
context Pediatric Cancer
workflowStatus RELEASED
registrationStatus Application
AlternateNames
name sample_type_category
type GC Alt Name
context CRDC
name SPECIMEN
type PCDC Alt Name
context Pediatric Cancer
name specimen_category
type CTDC Alt Name
context CRDC
name specimen
type CTDC Table
context CRDC
name specimen
type C3DC Alt Name
context Pediatric Cancer
name Laboratory Test
type C3DC Table
context Pediatric Cancer
name Specimen Material Category
type CRDC Alt Name
context CRDC
ReferenceDocuments
documentName PQT
documentText Specimen Category
documentType Preferred Question Text
url
context CRDC
apiResponse
type S