| DataElement |
| publicId |
12083894 |
| version |
1 |
| longName |
Specimen Original Anatomic Site Uberon Identifier |
| shortName |
11344424v1.00:11365369v1.00 |
| definition |
The location within the body from which a specimen was originally obtained as captured in the Uberon identifier. |
| context |
CRDC |
| origin |
CRDC:Cancer Research Data Commons |
| workflowStatus |
RELEASED |
| registrationStatus |
Standard |
| latestVersionIndicator |
Yes |
| beginDate |
2022-11-17 |
| endDate |
|
| changeDescription |
|
| administrativeNotes |
7/14/26 added CIDC Appendix A Alts, definition, and CSI. jk
5/20/25 Classified in GDC Candidate CSI, added alt name, def, per June 2025 GDC DD. sl;
9/20/24 Upd PQT for harmonization w other Uberon CDEs. mr;
4/30/24 Deleted duplicate CRDC alt name. mr;
4/26/24 Upd Example to use colon instead of underscore, per email from Sherita Alai. mr;
4/23/24 Upd ref docs to be consistent w other CRDC DSS UBERON CDEs. mr;
2/6/24 Added CDS Alt name, def and CSI. BF;1/17/24 upd CRDC alt Name from from Uberon Specimen Anatomic Site Identifier to Specimen Anatomic Site Uberon Identifier. UPd Example and Coding Inst to use ":" per SME. jk; 2/23/23 Changed ref doc Coding Instr to newly added Instructions. mr;
2/20/23 Added SDO alt name id. mr;
2/1/23 Released per CRDC DSS mtg of 2/1. May require versioning in future if by-reference or external stds policies change. mr;
1/30/23 Added CRDC Example ref doc. mr;
1/5/23 Updated alt name, alt def, PQT to harmonize w corresponding Uberon Name CDE (12299653). mr;
12/28/22 Updated Coding Instruction to be consistent w other by-reference CDEs. mr;
12/27/22 Changed def to 'as captured in'. mr;
12/13/22 Removed example Uberon code from definition. mr;
12/7/22 Update LN to reflect new rep term of Identifier. mr;
11/21/11 Released per CRDC DSS. mr;
11/18/22 Changed 'represented' to 'as captured' in def. Added CRDC def as alt def. mr;
11/17/22 Created per CRDC DSS. mr |
| unresolvedIssues |
|
| deletedIndicator |
No |
| createdBy |
COLBERTM |
| dateCreated |
2022-11-17 |
| modifiedBy |
JKNABLE |
| dateModified |
2026-07-14 |
| DataElementConcept |
| publicId |
11344424 |
| version |
1 |
| longName |
Specimen Original Anatomic Site |
| shortName |
2859635v1.00:2191139v1.00 |
| definition |
Any material sample taken from a biological entity for testing, diagnostic, propagation, treatment or research purposes, including a sample obtained from a living organism or taken from the biological object after halting of all its life functions. Biospecimen can contain one or more components including but not limited to cellular molecules, cells, tissues, organs, body fluids, embryos, and body excretory products.:Preceding all others in time or being as first made or performed._Named locations of or within the body. |
| context |
CRDC |
| origin |
|
| workflowStatus |
RELEASED |
| registrationStatus |
Qualified |
| latestVersionIndicator |
Yes |
| beginDate |
2022-09-30 |
| endDate |
|
| changeDescription |
|
| administrativeNotes |
11/21/22 Released per CRDC DSS. mr;
11/17/22 Added 'original' to DEC. mr;
9/30/22 Created per CRDC DSS RFC16. mr; |
| unresolvedIssues |
|
| deletedIndicator |
No |
| createdBy |
COLBERTM |
| dateCreated |
2022-09-30 |
| modifiedBy |
SLAUER |
| dateModified |
2025-07-08 |
| ObjectClass |
| publicId |
2859635 |
| version |
1 |
| longName |
Biospecimen |
| shortName |
C70699 |
| definition |
Any material sample taken from a biological entity for testing, diagnostic, propagation, treatment or research purposes, including a sample obtained from a living organism or taken from the biological object after halting of all its life functions. Biospecimen can contain one or more components including but not limited to cellular molecules, cells, tissues, organs, body fluids, embryos, and body excretory products. |
| context |
NCIP |
| origin |
NCI Thesaurus |
| workflowStatus |
RELEASED |
| registrationStatus |
Application |
| latestVersionIndicator |
Yes |
| beginDate |
2009-04-01 |
| endDate |
|
| changeDescription |
|
| administrativeNotes |
|
| unresolvedIssues |
|
| deletedIndicator |
No |
| createdBy |
UMLLOADER_TAVERNA |
| dateCreated |
2009-04-01 |
| modifiedBy |
ONEDATA |
| dateModified |
2009-04-01 |
| Concepts |
| longName |
Biospecimen |
| conceptCode |
C70699 |
| definition |
Any material sample taken from a biological entity for testing, diagnostic, propagation, treatment or research purposes, including a sample obtained from a living organism or taken from the biological object after halting of all its life functions. Biospecimen can contain one or more components including but not limited to cellular molecules, cells, tissues, organs, body fluids, embryos, and body excretory products. |
| evsSource |
NCI_CONCEPT_CODE |
| primaryIndicator |
Yes |
| displayOrder |
0 |
|
|
|
| Property |
| publicId |
12093766 |
| version |
1 |
| longName |
Original Anatomic Site |
| shortName |
C25604:C13717 |
| definition |
Preceding all others in time or being as first made or performed._Named locations of or within the body. |
| context |
NCIP |
| origin |
|
| workflowStatus |
RELEASED |
| registrationStatus |
Application |
| latestVersionIndicator |
Yes |
| beginDate |
2022-11-17 |
| endDate |
|
| changeDescription |
|
| administrativeNotes |
|
| unresolvedIssues |
|
| deletedIndicator |
No |
| createdBy |
COLBERTM |
| dateCreated |
2022-11-17 |
| modifiedBy |
COLBERTM |
| dateModified |
2022-11-17 |
| Concepts |
| longName |
Original |
| conceptCode |
C25604 |
| definition |
Preceding all others in time or being as first made or performed. |
| evsSource |
NCI_CONCEPT_CODE |
| primaryIndicator |
No |
| displayOrder |
1 |
|
| longName |
Anatomic Site |
| conceptCode |
C13717 |
| definition |
Named locations of or within the body. |
| evsSource |
NCI_CONCEPT_CODE |
| primaryIndicator |
Yes |
| displayOrder |
0 |
|
|
|
| ConceptualDomain |
| publicId |
2008526 |
| version |
1 |
| longName |
Anatomic Sites |
| shortName |
ANAT_SITES |
| definition |
locations or structures in the human body. |
| context |
CTEP |
| origin |
|
| workflowStatus |
RELEASED |
| registrationStatus |
Application |
| latestVersionIndicator |
Yes |
| beginDate |
2002-12-16 |
| endDate |
|
| changeDescription |
|
| administrativeNotes |
|
| unresolvedIssues |
|
| deletedIndicator |
No |
| createdBy |
MSUPLEY |
| dateCreated |
2002-12-16 |
| modifiedBy |
SBR |
| dateModified |
2003-10-29 |
|
|
| ValueDomain |
| publicId |
11365369 |
| version |
1 |
| longName |
Uberon Identifier |
| shortName |
11365369v1.00 |
| definition |
A symbol or combination of symbols and characters to capture the UBERON anatomic site code (ex: UBERON:0006209 or UBERON_0006209)._One or more characters used to identify, name, or characterize the nature, properties, or contents of a thing. |
| context |
CRDC |
| type |
Enumerated by Reference |
| referenceTerminology |
Uberon|C190111 |
| referenceTerminologyDataValueSource |
Code |
| dataType |
CHARACTER |
| minLength |
|
| maxLength |
30 |
| minValue |
|
| maxValue |
|
| decimalPlace |
|
| origin |
CRDC:Cancer Research Data Commons |
| workflowStatus |
RELEASED |
| registrationStatus |
Qualified |
| latestVersionIndicator |
Yes |
| beginDate |
2022-10-03 |
| endDate |
|
| changeDescription |
|
| administrativeNotes |
5/15/24 Modified PV to be the URL to Uberon. Per mtg w DW on 5/2/24.
4/23/24 Released per DSS for use in the Anatomic Site CDEs. mr;
3/28/23 Upd VD type from Enumerated to Enumerated by-reference for this existing by-ref VD. We retained the existing ref docs pointing to the external source. mr;
2/1/23 Released per CRDC DSS mtg 2/1. Possible versioning/revisions in future if by-reference/external std policies change. mr;
1/5/23 Updated CD to be consistent w other CRDC AIs. mr;
12/28/22 Updated Coding Instruction to be consistent w other by-reference CDEs. mr;
12/7/22 Changed rep term from Code to ID since Uberon calls it an ID. mr;
12/6/22 Changed to enumerated and added single PV pointing to Uberon. mr;
11/21/22 Released per CRDC DSS. mr;
11/17/22 Changed rep term from Anat Site to Code. mr;
10/5/22 Per Smita and Wendy, this DE/DEC/VD is on hold until external reference is determined and mapped. mr;
10/3/22 Created per CRDC DSS. mr; |
| unresolvedIssues |
|
| deletedIndicator |
No |
| createdBy |
COLBERTM |
| dateCreated |
2022-10-03 |
| modifiedBy |
SLAUER |
| dateModified |
2025-07-08 |
| PermissibleValues |
| publicId |
9109702 |
| value |
https://www.ebi.ac.uk/ols4/ontologies/uberon |
| valueDescription |
|
| origin |
|
| beginDate |
2022-12-06 |
| endDate |
|
| deletedIndicator |
No |
| createdBy |
COLBERTM |
| dateCreated |
2022-12-06 |
| modifiedBy |
COLBERTM |
| dateModified |
2024-05-15 |
| ValueMeaning |
| publicId |
12126011 |
| version |
1 |
| longName |
Uberon |
| shortName |
12126011v1.00 |
| definition |
An integrated cross-species anatomy ontology representing a variety of entities classified according to traditional anatomical criteria such as structure, function, and developmental lineage. The ontology includes comprehensive relationships to taxon-specific anatomical ontologies, allowing integration of functional, phenotype and expression data. |
| context |
NCIP |
| origin |
|
| workflowStatus |
RELEASED |
| registrationStatus |
Application |
| latestVersionIndicator |
Yes |
| beginDate |
2022-12-06 |
| endDate |
|
| changeDescription |
|
| administrativeNotes |
|
| unresolvedIssues |
|
| deletedIndicator |
No |
| createdBy |
COLBERTM |
| dateCreated |
2022-12-06 |
| modifiedBy |
JKNABLE |
| dateModified |
2024-04-29 |
| Concepts |
| longName |
Uberon |
| conceptCode |
C190111 |
| definition |
An integrated cross-species anatomy ontology representing a variety of entities classified according to traditional anatomical criteria such as structure, function, and developmental lineage. The ontology includes comprehensive relationships to taxon-specific anatomical ontologies, allowing integration of functional, phenotype and expression data. |
| evsSource |
NCI_CONCEPT_CODE |
| primaryIndicator |
Yes |
| displayOrder |
0 |
|
|
|
|
|
| ConceptualDomain |
| publicId |
2435018 |
| version |
1 |
| longName |
Clinical or Research Activity |
| shortName |
C16203 |
| definition |
Any specific activity undertaken during the course of a clinical study or research protocol. |
| context |
NCIP |
| origin |
NCI Thesaurus |
| workflowStatus |
RELEASED |
| registrationStatus |
Application |
| latestVersionIndicator |
Yes |
| beginDate |
2005-12-06 |
| endDate |
|
| changeDescription |
|
| administrativeNotes |
|
| unresolvedIssues |
|
| deletedIndicator |
No |
| createdBy |
CURTIST |
| dateCreated |
2005-12-06 |
| modifiedBy |
SBR |
| dateModified |
2006-12-20 |
|
| RepresentationTerm |
| publicId |
12129175 |
| version |
1 |
| longName |
Uberon Identifier |
| shortName |
12129175v1.00 |
| definition |
An integrated cross-species anatomy ontology representing a variety of entities classified according to traditional anatomical criteria such as structure, function, and developmental lineage. The ontology includes comprehensive relationships to taxon-specific anatomical ontologies, allowing integration of functional, phenotype and expression data._One or more characters used to identify, name, or characterize the nature, properties, or contents of a thing. |
| context |
NCIP |
| origin |
|
| workflowStatus |
RELEASED |
| registrationStatus |
Application |
| latestVersionIndicator |
Yes |
| beginDate |
2022-12-07 |
| endDate |
|
| changeDescription |
|
| administrativeNotes |
|
| unresolvedIssues |
|
| deletedIndicator |
No |
| createdBy |
COLBERTM |
| dateCreated |
2022-12-07 |
| modifiedBy |
COLBERTM |
| dateModified |
2022-12-07 |
| Concepts |
| longName |
Uberon |
| conceptCode |
C190111 |
| definition |
An integrated cross-species anatomy ontology representing a variety of entities classified according to traditional anatomical criteria such as structure, function, and developmental lineage. The ontology includes comprehensive relationships to taxon-specific anatomical ontologies, allowing integration of functional, phenotype and expression data. |
| evsSource |
NCI_CONCEPT_CODE |
| primaryIndicator |
No |
| displayOrder |
1 |
|
| longName |
Identifier |
| conceptCode |
C25364 |
| definition |
One or more characters used to identify, name, or characterize the nature, properties, or contents of a thing. |
| evsSource |
NCI_CONCEPT_CODE |
| primaryIndicator |
Yes |
| displayOrder |
0 |
|
|
|
|
| ClassificationSchemes |
| publicId |
8064110 |
| version |
1 |
| longName |
GC (General Commons) |
| context |
CRDC |
| workflowStatus |
RELEASED |
| registrationStatus |
Application |
| ClassificationSchemeItems |
| publicId |
14470388 |
| version |
1 |
| longName |
Imaging |
| context |
CRDC |
| workflowStatus |
RELEASED |
| registrationStatus |
Application |
|
|
|
| publicId |
10429357 |
| version |
1 |
| longName |
GDC (Genomic Data Commons) |
| context |
CRDC |
| workflowStatus |
DRAFT NEW |
| registrationStatus |
Application |
| ClassificationSchemeItems |
| publicId |
14506028 |
| version |
1 |
| longName |
Candidate New GDC CDEs |
| context |
CRDC |
| workflowStatus |
DRAFT NEW |
| registrationStatus |
Application |
|
|
|
| publicId |
10466051 |
| version |
1 |
| longName |
All CRDC Standard CDEs |
| context |
CRDC |
| workflowStatus |
RELEASED |
| registrationStatus |
Application |
| ClassificationSchemeItems |
| publicId |
10466053 |
| version |
1 |
| longName |
Specimen |
| context |
CRDC |
| workflowStatus |
RELEASED |
| registrationStatus |
Application |
|
|
|
| publicId |
11518160 |
| version |
1 |
| longName |
CTDC (Clinical and Translational Data Commons) |
| context |
CRDC |
| workflowStatus |
RELEASED |
| registrationStatus |
Application |
| ClassificationSchemeItems |
| publicId |
14413707 |
| version |
1 |
| longName |
CTDC Model |
| context |
CRDC |
| workflowStatus |
RELEASED |
| registrationStatus |
Application |
|
| publicId |
14413713 |
| version |
1 |
| longName |
Biospecimen |
| context |
CRDC |
| workflowStatus |
RELEASED |
| registrationStatus |
Application |
|
| publicId |
14931970 |
| version |
1 |
| longName |
Clinical Trial |
| context |
CRDC |
| workflowStatus |
RELEASED |
| registrationStatus |
Application |
|
| publicId |
16075375 |
| version |
1 |
| longName |
CIDC Model |
| context |
CRDC |
| workflowStatus |
RELEASED |
| registrationStatus |
Application |
|
| publicId |
16075992 |
| version |
1 |
| longName |
Specimen |
| context |
CRDC |
| workflowStatus |
RELEASED |
| registrationStatus |
Application |
|
|
|
| publicId |
12173174 |
| version |
1 |
| longName |
PCDC (Pediatric Cancer Data Commons Aggregated Dictionary) |
| context |
Pediatric Cancer |
| workflowStatus |
RELEASED |
| registrationStatus |
Application |
| ClassificationSchemeItems |
| publicId |
12173177 |
| version |
1 |
| longName |
Testing |
| context |
Pediatric Cancer |
| workflowStatus |
RELEASED |
| registrationStatus |
Application |
|
| publicId |
12173196 |
| version |
1 |
| longName |
Genetic Analysis |
| context |
Pediatric Cancer |
| workflowStatus |
RELEASED |
| registrationStatus |
Application |
|
|
|
| publicId |
15020048 |
| version |
1 |
| longName |
ICDC (Integrated Canine Data Commons) |
| context |
CRDC |
| workflowStatus |
RELEASED |
| registrationStatus |
Application |
| ClassificationSchemeItems |
| publicId |
15020056 |
| version |
1 |
| longName |
Biospecimen |
| context |
CRDC |
| workflowStatus |
RELEASED |
| registrationStatus |
Application |
|
|
|
|
| AlternateNames |
| name |
SPECIMEN |
| type |
PCDC Alt Name |
| context |
Pediatric Cancer |
|
| name |
id |
| type |
SDO Alt Name |
| context |
NCIP |
|
| name |
anatomical_collection_site |
| type |
CTDC Alt Name |
| context |
CRDC |
|
| name |
sample_anatomic_site |
| type |
GC Alt Name |
| context |
CRDC |
|
| name |
Specimen Anatomic Site UBERON Identifier |
| type |
CRDC Alt Name |
| context |
CRDC |
|
| name |
surgical_procedure_anatomical_location |
| type |
CTDC Alt Name |
| context |
CRDC |
|
| name |
radiological_procedure_anatomical_location |
| type |
CTDC Alt Name |
| context |
CRDC |
|
| name |
specimen |
| type |
CTDC Table |
| context |
CRDC |
|
| name |
biospecimen_anatomic_site |
| type |
GDC Alt Name |
| context |
GDC |
|
| name |
organ_site_of_collection |
| type |
CIDC Alt Name |
| context |
CRDC |
|
| name |
specimen |
| type |
CIDC Table |
| context |
CRDC |
|
|
| ReferenceDocuments |
| documentName |
PQT |
| documentText |
Specimen Site Uberon ID |
| documentType |
Preferred Question Text |
| url |
|
| context |
CRDC |
|
| documentName |
CRDC Instruction |
| documentText |
1. Go to https://www.ebi.ac.uk/ols4/ontologies/uberon
2. Use the search field to search for your term.
3. Use the Copy button at the top of the search results to copy the Uberon ID. |
| documentType |
Instructions |
| url |
https://www.ebi.ac.uk/ols4/ontologies/uberon |
| context |
CRDC |
|
| documentName |
CRDC SDO Reference |
| documentText |
Uberon |
| documentType |
REFERENCE |
| url |
https://www.ebi.ac.uk/ols4/ontologies/uberon |
| context |
CRDC |
|
| documentName |
CRDC Example |
| documentText |
UBERON:0002048 |
| documentType |
EXAMPLE |
| url |
|
| context |
CRDC |
|
| documentName |
CRDC Instruction |
| documentText |
UBERON_####### |
| documentType |
Instructions |
| url |
|
| context |
CRDC |
|
|
|