| publicId |
11556322 |
| version |
2 |
| longName |
Genome Assembly Sequence Depth of Coverage Integer |
| shortName |
11529069v1.00:10540093v1.00 |
| definition |
The number of times a particular locus (site, nucleotide, amplicon, region) was sequenced. |
| context |
CRDC |
| origin |
CDS:Cancer Data Service |
| workflowStatus |
RELEASED |
| registrationStatus |
Application |
| latestVersionIndicator |
Yes |
| beginDate |
2022-11-08 |
| endDate |
|
| changeDescription |
|
| administrativeNotes |
9/30/25 Per SN CADSR0005397 - CDE versioned and released to change from enumerated integer representation to non-enumerated integer value. No impact to the data value being collected. jk;
2/20/24 AI released per SME/Amanda Bell approval. ls5/16/23 changed origin to CDS. BF; 1/19/23 Added CDS alt def; removed general CDS CSI, added CDS|Sequencing CSI; per metadata template. mr
11/8/22 upd PQT. jk; 11/8/22 Created per CRDC CDS submission metatdata template. mr |
| unresolvedIssues |
|
| deletedIndicator |
No |
| createdBy |
JKNABLE |
| dateCreated |
2025-09-30 |
| modifiedBy |
JKNABLE |
| dateModified |
2025-09-30 |
| DataElementConcept |
| publicId |
11529069 |
| version |
1 |
| longName |
Genome Assembly Sequence Depth of Coverage |
| shortName |
11529068v1.00:6430147v1.00 |
| definition |
An annotated assembly of genome sequences created by the assimilation of data pieces from numerous sources.:The number of times a particular locus (site, nucleotide, amplicon, region) was sequenced. |
| context |
CRDC |
| origin |
CDS:Cancer Data Service |
| workflowStatus |
RELEASED |
| registrationStatus |
Application |
| latestVersionIndicator |
Yes |
| beginDate |
2022-11-03 |
| endDate |
|
| changeDescription |
|
| administrativeNotes |
2/20/24 AI released per SME/Amanda Bell approval.ls5/17/23 changed origin to CDS. BF; 11/8/22 Deleted 'Read' from Read Depth of Coverage. mr;
11/3/22 Created per CRDC CDS submission metatdata template. mr |
| unresolvedIssues |
|
| deletedIndicator |
No |
| createdBy |
COLBERTM |
| dateCreated |
2022-11-03 |
| modifiedBy |
SOKKERL |
| dateModified |
2024-02-20 |
| ObjectClass |
| publicId |
11529068 |
| version |
1 |
| longName |
Genome Assembly Sequence |
| shortName |
C73517 |
| definition |
An annotated assembly of genome sequences created by the assimilation of data pieces from numerous sources. |
| context |
NCIP |
| origin |
|
| workflowStatus |
RELEASED |
| registrationStatus |
Application |
| latestVersionIndicator |
Yes |
| beginDate |
2022-11-03 |
| endDate |
|
| changeDescription |
|
| administrativeNotes |
|
| unresolvedIssues |
|
| deletedIndicator |
No |
| createdBy |
COLBERTM |
| dateCreated |
2022-11-03 |
| modifiedBy |
COLBERTM |
| dateModified |
2022-11-03 |
| Concepts |
| longName |
Genome Assembly Sequence |
| conceptCode |
C73517 |
| definition |
An annotated assembly of genome sequences created by the assimilation of data pieces from numerous sources. |
| evsSource |
NCI_CONCEPT_CODE |
| primaryIndicator |
Yes |
| displayOrder |
0 |
|
|
|
| Property |
| publicId |
6430147 |
| version |
1 |
| longName |
Read Depth |
| shortName |
C155320 |
| definition |
The number of times a particular locus (site, nucleotide, amplicon, region) was sequenced. |
| context |
NCIP |
| origin |
NCI Thesaurus |
| workflowStatus |
RELEASED |
| registrationStatus |
Application |
| latestVersionIndicator |
Yes |
| beginDate |
2018-09-14 |
| endDate |
|
| changeDescription |
|
| administrativeNotes |
|
| unresolvedIssues |
|
| deletedIndicator |
No |
| createdBy |
TSESU |
| dateCreated |
2018-09-14 |
| modifiedBy |
ONEDATA |
| dateModified |
2018-09-14 |
| Concepts |
| longName |
Read Depth |
| conceptCode |
C155320 |
| definition |
The number of times a particular locus (site, nucleotide, amplicon, region) was sequenced. |
| evsSource |
NCI_CONCEPT_CODE |
| primaryIndicator |
Yes |
| displayOrder |
0 |
|
|
|
| ConceptualDomain |
| publicId |
2435018 |
| version |
1 |
| longName |
Clinical or Research Activity |
| shortName |
C16203 |
| definition |
Any specific activity undertaken during the course of a clinical study or research protocol. |
| context |
NCIP |
| origin |
NCI Thesaurus |
| workflowStatus |
RELEASED |
| registrationStatus |
Application |
| latestVersionIndicator |
Yes |
| beginDate |
2005-12-06 |
| endDate |
|
| changeDescription |
|
| administrativeNotes |
|
| unresolvedIssues |
|
| deletedIndicator |
No |
| createdBy |
CURTIST |
| dateCreated |
2005-12-06 |
| modifiedBy |
SBR |
| dateModified |
2006-12-20 |
|
|
| ValueDomain |
| publicId |
10540093 |
| version |
1 |
| longName |
Integer |
| shortName |
10540093v1.00 |
| definition |
A number with no fractional part, including the negative and positive numbers as well as zero. |
| context |
CRDC |
| type |
Non-enumerated |
| dataType |
Integer |
| minLength |
|
| maxLength |
12 |
| minValue |
|
| maxValue |
|
| decimalPlace |
|
| origin |
CRDC:Cancer Research Data Commons |
| workflowStatus |
RELEASED |
| registrationStatus |
Standard |
| latestVersionIndicator |
Yes |
| beginDate |
2022-06-29 |
| endDate |
|
| changeDescription |
|
| administrativeNotes |
2/11/26 Updated comment. mr;
7/19/22 Per Smita, approved as DST Standard, updated WF/RS. jk;
6/29/22 created as default VD for CRDC CDEs. jk |
| unresolvedIssues |
|
| deletedIndicator |
No |
| createdBy |
JKNABLE |
| dateCreated |
2022-06-29 |
| modifiedBy |
COLBERTM |
| dateModified |
2026-02-11 |
| ConceptualDomain |
| publicId |
2008541 |
| version |
1 |
| longName |
Numbers |
| shortName |
NUMS |
| definition |
the set of non-negative integers. |
| context |
CTEP |
| origin |
|
| workflowStatus |
RELEASED |
| registrationStatus |
Application |
| latestVersionIndicator |
Yes |
| beginDate |
2002-12-19 |
| endDate |
|
| changeDescription |
|
| administrativeNotes |
|
| unresolvedIssues |
|
| deletedIndicator |
No |
| createdBy |
MSUPLEY |
| dateCreated |
2002-12-19 |
| modifiedBy |
SBR |
| dateModified |
2003-10-29 |
|
| RepresentationTerm |
| publicId |
2433737 |
| version |
1 |
| longName |
Integer |
| shortName |
C45255 |
| definition |
A number with no fractional part. |
| context |
NCIP |
| origin |
NCI Thesaurus |
| workflowStatus |
RELEASED |
| registrationStatus |
Standard |
| latestVersionIndicator |
Yes |
| beginDate |
2005-11-25 |
| endDate |
|
| changeDescription |
|
| administrativeNotes |
|
| unresolvedIssues |
|
| deletedIndicator |
No |
| createdBy |
CROWLEYR |
| dateCreated |
2005-11-25 |
| modifiedBy |
ONEDATA |
| dateModified |
2005-11-25 |
| Concepts |
| longName |
Integer |
| conceptCode |
C45255 |
| definition |
A number with no fractional part, including the negative and positive numbers as well as zero. |
| evsSource |
NCI_CONCEPT_CODE |
| primaryIndicator |
Yes |
| displayOrder |
0 |
|
|
|
|
| ClassificationSchemes |
| publicId |
8064110 |
| version |
1 |
| longName |
GC (General Commons) |
| context |
CRDC |
| workflowStatus |
RELEASED |
| registrationStatus |
Application |
| ClassificationSchemeItems |
| publicId |
12177495 |
| version |
1 |
| longName |
Sequencing |
| context |
CRDC |
| workflowStatus |
RELEASED |
| registrationStatus |
Application |
|
|
|
| publicId |
13574489 |
| version |
1 |
| longName |
CCDI (Childhood Cancer Data Initiative) |
| context |
Pediatric Cancer |
| workflowStatus |
RELEASED |
| registrationStatus |
Application |
| ClassificationSchemeItems |
| publicId |
13594094 |
| version |
1 |
| longName |
Sequencing |
| context |
Pediatric Cancer |
| workflowStatus |
RELEASED |
| registrationStatus |
Application |
|
| publicId |
13594223 |
| version |
1 |
| longName |
Sequencing File |
| context |
Pediatric Cancer |
| workflowStatus |
RELEASED |
| registrationStatus |
Application |
|
| publicId |
13594225 |
| version |
1 |
| longName |
Single Cell Sequencing File |
| context |
Pediatric Cancer |
| workflowStatus |
RELEASED |
| registrationStatus |
Application |
|
|
|
|
| AlternateNames |
| name |
sequencing_file |
| type |
CCDI Table |
| context |
Pediatric Cancer |
|
| name |
coverage |
| type |
CCDI Alt Name |
| context |
Pediatric Cancer |
|
| name |
coverage |
| type |
GC Alt Name |
| context |
CRDC |
|
|
| ReferenceDocuments |
| documentName |
PQT |
| documentText |
Genome Assembly Sequence Depth of Coverage |
| documentType |
Preferred Question Text |
| url |
|
| context |
CRDC |
|
|