| publicId |
11527735 |
| version |
2 |
| longName |
Molecular Analysis Sequencing Library Read Layout Type |
| shortName |
11527732v2.00:11527734v2.00 |
| definition |
The read strategy or method that was used for sequencing and analysis of a nucleotide library. |
| context |
CRDC |
| origin |
CDS:Cancer Data Service |
| workflowStatus |
DRAFT MOD |
| registrationStatus |
Application |
| latestVersionIndicator |
Yes |
| beginDate |
2022-11-03 |
| endDate |
|
| changeDescription |
|
| administrativeNotes |
6/16/26 Added CTDC alt name, CSI. mr;
6/9/26 Versioned to 2.0 to delete Single-indexed C165444 PV and replace with new concept for Single-End C227518, and to align with Code Map OCs. mr;
2/24/26 Added CIDC alts, CSI. mr;
12/18/25 added "Long Read" (new concept C223895) per SN 5794 for HTAN data submission to GC. jk;
2/20/24 AI released per SME/Amanda Bell approval. ls;
5/16/23 changed origin to CDS. BF;
1/19/23 Added CDS alt def, ref doc EXAMPLE; removed general CDS CSI, added CDS|Sequencing CSI; per metadata template. mr
11/3/22 Created per CRDC CDS submission metatdata template. mr |
| unresolvedIssues |
|
| deletedIndicator |
No |
| createdBy |
COLBERTM |
| dateCreated |
2026-06-09 |
| modifiedBy |
COLBERTM |
| dateModified |
2026-06-16 |
| DataElementConcept |
| publicId |
11527732 |
| version |
2 |
| longName |
Molecular Analysis Sequencing Library Read Layout |
| shortName |
2626369v1.00:11555666v1.00 |
| definition |
A laboratory procedure that involves the study of tissues, cells, and fluids using techniques to analyze biologically active molecules, including nucleic acids, proteins, lipids and carbohydrates, for the identification of processes, characteristics and abnormalities at the molecular level.:Specifies what read strategy or method was used for sequencing and analysis of a nucleotide library. |
| context |
CRDC |
| origin |
CDS:Cancer Data Service |
| workflowStatus |
DRAFT MOD |
| registrationStatus |
Application |
| latestVersionIndicator |
Yes |
| beginDate |
2022-11-03 |
| endDate |
|
| changeDescription |
|
| administrativeNotes |
6/9/26 Versioned to 2.0 to delete Single-indexed C165444 PV and replace with new concept for Single-End C227518 and to update OC for Code Map while CDE was being versioned. mr;
2/20/24 AI released per SME/Amanda Bell approval.ls;
5/17/23 changed origin to CDS. BF;
11/3/22 Created per CRDC CDS submission metatdata template. mr |
| unresolvedIssues |
|
| deletedIndicator |
No |
| createdBy |
COLBERTM |
| dateCreated |
2026-06-09 |
| modifiedBy |
COLBERTM |
| dateModified |
2026-06-09 |
| ObjectClass |
| publicId |
2626369 |
| version |
1 |
| longName |
Molecular Analysis |
| shortName |
C19770 |
| definition |
Techniques for studying or analyzing the genetic composition and mechanisms of living organisms at the molecular level. May refer to the understanding and manipulation of genes (DNA). |
| context |
NCIP |
| origin |
NCI Thesaurus |
| workflowStatus |
RELEASED |
| registrationStatus |
Application |
| latestVersionIndicator |
Yes |
| beginDate |
2007-04-13 |
| endDate |
|
| changeDescription |
|
| administrativeNotes |
|
| unresolvedIssues |
|
| deletedIndicator |
No |
| createdBy |
ALAIS |
| dateCreated |
2007-04-13 |
| modifiedBy |
ONEDATA |
| dateModified |
2007-04-13 |
| Concepts |
| longName |
Molecular Analysis |
| conceptCode |
C19770 |
| definition |
A laboratory procedure that involves the study of tissues, cells, and fluids using techniques to analyze biologically active molecules, including nucleic acids, proteins, lipids and carbohydrates, for the identification of processes, characteristics and abnormalities at the molecular level. |
| evsSource |
NCI_CONCEPT_CODE |
| primaryIndicator |
Yes |
| displayOrder |
0 |
|
|
|
| Property |
| publicId |
11555666 |
| version |
1 |
| longName |
Sequencing Library Read Layout Indicator |
| shortName |
C175894 |
| definition |
Specifies what read strategy or method was used for sequencing and analysis of a nucleotide library. |
| context |
NCIP |
| origin |
|
| workflowStatus |
RELEASED |
| registrationStatus |
Application |
| latestVersionIndicator |
Yes |
| beginDate |
2022-11-06 |
| endDate |
|
| changeDescription |
|
| administrativeNotes |
|
| unresolvedIssues |
|
| deletedIndicator |
No |
| createdBy |
JKNABLE |
| dateCreated |
2022-11-06 |
| modifiedBy |
JKNABLE |
| dateModified |
2022-11-06 |
| Concepts |
| longName |
Sequencing Library Read Layout Indicator |
| conceptCode |
C175894 |
| definition |
Specifies what read strategy or method was used for sequencing and analysis of a nucleotide library. |
| evsSource |
NCI_CONCEPT_CODE |
| primaryIndicator |
Yes |
| displayOrder |
0 |
|
|
|
| ConceptualDomain |
| publicId |
2435018 |
| version |
1 |
| longName |
Clinical or Research Activity |
| shortName |
C16203 |
| definition |
Any specific activity undertaken during the course of a clinical study or research protocol. |
| context |
NCIP |
| origin |
NCI Thesaurus |
| workflowStatus |
RELEASED |
| registrationStatus |
Application |
| latestVersionIndicator |
Yes |
| beginDate |
2005-12-06 |
| endDate |
|
| changeDescription |
|
| administrativeNotes |
|
| unresolvedIssues |
|
| deletedIndicator |
No |
| createdBy |
CURTIST |
| dateCreated |
2005-12-06 |
| modifiedBy |
SBR |
| dateModified |
2006-12-20 |
|
|
| ValueDomain |
| publicId |
11527734 |
| version |
2 |
| longName |
Sequencing Library Read Layout Type |
| shortName |
11527734v2.00 |
| definition |
The determination of the sequence of component residues in a macromolecule, e.g. amino acids in a protein or nucleotide bases in DNA/RNA or the computational analysis performed to determine the similarities between nonidentical proteins or molecules of DNA or RNA._Something distinguishable as an identifiable class based on common qualities._Specifies what read strategy or method was used for sequencing and analysis of a nucleotide library. |
| context |
CRDC |
| type |
Enumerated |
| dataType |
CHARACTER |
| minLength |
|
| maxLength |
50 |
| minValue |
|
| maxValue |
|
| decimalPlace |
|
| origin |
CDS:Cancer Data Service |
| workflowStatus |
DRAFT MOD |
| registrationStatus |
Application |
| latestVersionIndicator |
Yes |
| beginDate |
2022-11-03 |
| endDate |
|
| changeDescription |
|
| administrativeNotes |
6/9/26 Versioned to 2.0 to delete Single-indexed C165444 PV and replace with new concept for Single-End C227518. mr;
12/18/25 added "Long Read" (new concept C223895) per SN 5794 for HTAN data submission to GC. jk;
2/20/24 AI released per SME/Amanda Bell approval.ls;
5/17/23 changed origin to CDS. BF;
11/8/22 Added max len, changed datatype to Character. mr;
11/3/22 Created per CRDC CDS submission metadata template. mr |
| unresolvedIssues |
|
| deletedIndicator |
No |
| createdBy |
COLBERTM |
| dateCreated |
2026-06-09 |
| modifiedBy |
COLBERTM |
| dateModified |
2026-06-09 |
| PermissibleValues |
| publicId |
9272688 |
| value |
Paired-End |
| valueDescription |
|
| origin |
|
| beginDate |
2022-11-03 |
| endDate |
|
| deletedIndicator |
No |
| createdBy |
COLBERTM |
| dateCreated |
2026-06-09 |
| modifiedBy |
JKNABLE |
| dateModified |
2026-06-09 |
| ValueMeaning |
| publicId |
11529032 |
| version |
1 |
| longName |
Paired-End Sequencing |
| shortName |
11529032v1.00 |
| definition |
A DNA sequencing strategy where a single read is initiated from each end of a DNA fragment. |
| context |
NCIP |
| origin |
|
| workflowStatus |
RELEASED |
| registrationStatus |
Application |
| latestVersionIndicator |
Yes |
| beginDate |
2022-11-03 |
| endDate |
|
| changeDescription |
|
| administrativeNotes |
|
| unresolvedIssues |
|
| deletedIndicator |
No |
| createdBy |
COLBERTM |
| dateCreated |
2022-11-03 |
| modifiedBy |
COLBERTM |
| dateModified |
2026-02-27 |
| Concepts |
| longName |
Paired-End Sequencing |
| conceptCode |
C150423 |
| definition |
A DNA sequencing strategy where a single read is initiated from each end of a DNA fragment. |
| evsSource |
NCI_CONCEPT_CODE |
| primaryIndicator |
Yes |
| displayOrder |
0 |
|
|
| Designations |
| languageName |
ENGLISH |
| name |
Paired |
| type |
CIDC Alt Name |
| context |
CRDC |
| id |
4BD39F4B-04AD-09D1-E063-731AD00AFCD0 |
| createdBy |
Maureen Ryan |
| dateCreated |
2026-02-24 |
| modifiedBy |
COLBERTM |
| dateModified |
2026-02-27 |
|
|
|
|
| publicId |
9272690 |
| value |
Long Read |
| valueDescription |
|
| origin |
|
| beginDate |
2025-12-18 |
| endDate |
|
| deletedIndicator |
No |
| createdBy |
JKNABLE |
| dateCreated |
2026-06-09 |
| modifiedBy |
JKNABLE |
| dateModified |
2026-06-09 |
| ValueMeaning |
| publicId |
16861164 |
| version |
1 |
| longName |
Long Read Sequencing |
| shortName |
16861164v1.00 |
| definition |
The sequencing of long, continuous DNA fragments. |
| context |
NCIP |
| origin |
|
| workflowStatus |
RELEASED |
| registrationStatus |
Application |
| latestVersionIndicator |
Yes |
| beginDate |
2025-12-18 |
| endDate |
|
| changeDescription |
|
| administrativeNotes |
|
| unresolvedIssues |
|
| deletedIndicator |
No |
| createdBy |
JKNABLE |
| dateCreated |
2025-12-18 |
| modifiedBy |
JKNABLE |
| dateModified |
2025-12-18 |
| Concepts |
| longName |
Long Read Sequencing |
| conceptCode |
C223895 |
| definition |
The sequencing of long, continuous DNA fragments. |
| evsSource |
NCI_CONCEPT_CODE |
| primaryIndicator |
Yes |
| displayOrder |
0 |
|
|
|
|
| publicId |
9272728 |
| value |
Single-End |
| valueDescription |
|
| origin |
|
| beginDate |
2026-06-09 |
| endDate |
|
| deletedIndicator |
No |
| createdBy |
COLBERTM |
| dateCreated |
2026-06-09 |
| modifiedBy |
COLBERTM |
| dateModified |
2026-06-09 |
| ValueMeaning |
| publicId |
17348845 |
| version |
1 |
| longName |
Single-End Sequencing |
| shortName |
17348845v1.00 |
| definition |
A DNA sequencing strategy where a single read is initiated from a single end of a DNA fragment. |
| context |
NCIP |
| origin |
|
| workflowStatus |
RELEASED |
| registrationStatus |
Application |
| latestVersionIndicator |
Yes |
| beginDate |
2026-06-09 |
| endDate |
|
| changeDescription |
|
| administrativeNotes |
|
| unresolvedIssues |
|
| deletedIndicator |
No |
| createdBy |
COLBERTM |
| dateCreated |
2026-06-09 |
| modifiedBy |
COLBERTM |
| dateModified |
2026-06-09 |
| Concepts |
| longName |
Single-End Sequencing |
| conceptCode |
C227518 |
| definition |
A DNA sequencing strategy where a single read is initiated from a single end of a DNA fragment. |
| evsSource |
NCI_CONCEPT_CODE |
| primaryIndicator |
Yes |
| displayOrder |
0 |
|
|
| Designations |
| languageName |
ENGLISH |
| name |
Single |
| type |
CIDC Alt Name |
| context |
CRDC |
| id |
53D84D3B-C6F9-7D96-E063-731AD00A4AA9 |
| createdBy |
Maureen Ryan |
| dateCreated |
2026-06-09 |
| modifiedBy |
COLBERTM |
| dateModified |
2026-06-09 |
|
|
|
|
|
| ConceptualDomain |
| publicId |
2435018 |
| version |
1 |
| longName |
Clinical or Research Activity |
| shortName |
C16203 |
| definition |
Any specific activity undertaken during the course of a clinical study or research protocol. |
| context |
NCIP |
| origin |
NCI Thesaurus |
| workflowStatus |
RELEASED |
| registrationStatus |
Application |
| latestVersionIndicator |
Yes |
| beginDate |
2005-12-06 |
| endDate |
|
| changeDescription |
|
| administrativeNotes |
|
| unresolvedIssues |
|
| deletedIndicator |
No |
| createdBy |
CURTIST |
| dateCreated |
2005-12-06 |
| modifiedBy |
SBR |
| dateModified |
2006-12-20 |
|
| RepresentationTerm |
| publicId |
11555665 |
| version |
1 |
| longName |
Sequencing Library Read Layout Indicator Type |
| shortName |
11555665v1.00 |
| definition |
Specifies what read strategy or method was used for sequencing and analysis of a nucleotide library._Something distinguishable as an identifiable class based on common qualities. |
| context |
NCIP |
| origin |
|
| workflowStatus |
RELEASED |
| registrationStatus |
Application |
| latestVersionIndicator |
Yes |
| beginDate |
2022-11-06 |
| endDate |
|
| changeDescription |
|
| administrativeNotes |
|
| unresolvedIssues |
|
| deletedIndicator |
No |
| createdBy |
JKNABLE |
| dateCreated |
2022-11-06 |
| modifiedBy |
JKNABLE |
| dateModified |
2022-11-06 |
| Concepts |
| longName |
Sequencing Library Read Layout Indicator |
| conceptCode |
C175894 |
| definition |
Specifies what read strategy or method was used for sequencing and analysis of a nucleotide library. |
| evsSource |
NCI_CONCEPT_CODE |
| primaryIndicator |
No |
| displayOrder |
1 |
|
| longName |
Type |
| conceptCode |
C25284 |
| definition |
Something distinguishable as an identifiable class based on common qualities. |
| evsSource |
NCI_CONCEPT_CODE |
| primaryIndicator |
Yes |
| displayOrder |
0 |
|
|
|
|
| ClassificationSchemes |
| publicId |
8064110 |
| version |
1 |
| longName |
GC (General Commons) |
| context |
CRDC |
| workflowStatus |
RELEASED |
| registrationStatus |
Application |
| ClassificationSchemeItems |
| publicId |
12177495 |
| version |
1 |
| longName |
Sequencing |
| context |
CRDC |
| workflowStatus |
RELEASED |
| registrationStatus |
Application |
|
|
|
| publicId |
11518160 |
| version |
1 |
| longName |
CTDC (Clinical and Translational Data Commons) |
| context |
CRDC |
| workflowStatus |
RELEASED |
| registrationStatus |
Application |
| ClassificationSchemeItems |
| publicId |
14413707 |
| version |
1 |
| longName |
CTDC Model |
| context |
CRDC |
| workflowStatus |
RELEASED |
| registrationStatus |
Application |
|
| publicId |
14413713 |
| version |
1 |
| longName |
Biospecimen |
| context |
CRDC |
| workflowStatus |
RELEASED |
| registrationStatus |
Application |
|
| publicId |
17002960 |
| version |
1 |
| longName |
Assay |
| context |
CRDC |
| workflowStatus |
RELEASED |
| registrationStatus |
Application |
|
|
|
| publicId |
13574489 |
| version |
1 |
| longName |
CCDI (Childhood Cancer Data Initiative) |
| context |
Pediatric Cancer |
| workflowStatus |
RELEASED |
| registrationStatus |
Application |
| ClassificationSchemeItems |
| publicId |
13594094 |
| version |
1 |
| longName |
Sequencing |
| context |
Pediatric Cancer |
| workflowStatus |
RELEASED |
| registrationStatus |
Application |
|
| publicId |
13594223 |
| version |
1 |
| longName |
Sequencing File |
| context |
Pediatric Cancer |
| workflowStatus |
RELEASED |
| registrationStatus |
Application |
|
| publicId |
13594225 |
| version |
1 |
| longName |
Single Cell Sequencing File |
| context |
Pediatric Cancer |
| workflowStatus |
RELEASED |
| registrationStatus |
Application |
|
|
|
|
| AlternateNames |
| name |
sequencing_file |
| type |
CCDI Table |
| context |
Pediatric Cancer |
|
| name |
library_layout |
| type |
CCDI Alt Name |
| context |
Pediatric Cancer |
|
| name |
library_layout |
| type |
GC Alt Name |
| context |
CRDC |
|
| name |
paired_end_reads |
| type |
CIDC Alt Name |
| context |
CRDC |
|
| name |
paired_end_sequencing |
| type |
CTDC Alt Name |
| context |
CRDC |
|
|
| ReferenceDocuments |
| documentName |
PQT |
| documentText |
Read Layout |
| documentType |
Preferred Question Text |
| url |
|
| context |
CRDC |
|
| documentName |
CDS |
| documentText |
paired-end |
| documentType |
EXAMPLE |
| url |
|
| context |
CRDC |
|
|