| DataElement |
| publicId |
10543100 |
| version |
2 |
| longName |
Subject Taxonomy NCBI Identifier |
| shortName |
12136496v1.00:12136510v1.00 |
| definition |
The unique numerical identifier of a subject's organismal classification as captured in the National Center for Biotechnology Information (NCBI) Taxonomy standard nomenclature and classification repository. |
| context |
CRDC |
| origin |
CRDC:Cancer Research Data Commons |
| workflowStatus |
RELEASED |
| registrationStatus |
Standard |
| latestVersionIndicator |
Yes |
| beginDate |
2022-06-29 |
| endDate |
|
| changeDescription |
|
| administrativeNotes |
2/23/26 Added IDC alts and CSI. mr;
12/31/25 added PSDC Alts and CSI per model property-CDE mapping review. Cmt added 2/9/26 jk;
12/31/23 Added CDS Imaging Alt Name/Def/CSI. jk;
8/7/23 Added Alt Name for CDE with source of “DSS” in the CTDC data model. BF;
2/23/23 Changed Coding Instruction 2 to new Doc Type of Instruction. Edited Cdg Instr 1 to remove '1'. mr;
2/1/23 Released per CRDC DSS mtg 2/1. mr;
1/30/23 Added CRDC Example ref doc. mr;
1/9/23 Edited alt name type to CRITERION as placeholder then replaced with SDO Alt Name. mr;
12/27/22 Changed def to 'as captured in'. mr;
12/12/22 CDE versioned to comply with by-reference CDE format. New generic DEC and source specified VD. mr;
10/5/22 Released per CRDC DSS & jk email 10/4 7:57pm mr;
9/22/22 upd PQT and CRDC Alt Name to "NCBI Taxonomy ID" per SME (Smita) request.
6/29/22 Created for CRDC DSS harmonized data element. jk; |
| unresolvedIssues |
|
| deletedIndicator |
No |
| createdBy |
COLBERTM |
| dateCreated |
2022-12-12 |
| modifiedBy |
COLBERTM |
| dateModified |
2026-02-27 |
| DataElementConcept |
| publicId |
12136496 |
| version |
1 |
| longName |
Subject Taxonomy |
| shortName |
2523466v1.00:12136495v1.00 |
| definition |
A matter or an individual that is observed, analyzed, examined, investigated, experimented upon, or/and treated in the course of a particular study.:The theories and techniques of naming, describing, and classifying organisms, and the study of the relationships of taxa. |
| context |
CRDC |
| origin |
CRDC:Cancer Research Data Commons |
| workflowStatus |
RELEASED |
| registrationStatus |
Qualified |
| latestVersionIndicator |
Yes |
| beginDate |
2022-12-12 |
| endDate |
|
| changeDescription |
|
| administrativeNotes |
6/26/24 Corrected typo in LN. mr;
2/1/23 Released w CDE per CRDC DSS mtg 2/1. mr;
12/13/22 CDE versioned to comply with by-reference CDE format. New generic DEC and source specified VD. mr;
12/12/22 Created per CRDC DSS. mr |
| unresolvedIssues |
|
| deletedIndicator |
No |
| createdBy |
COLBERTM |
| dateCreated |
2022-12-12 |
| modifiedBy |
COLBERTM |
| dateModified |
2024-06-26 |
| ObjectClass |
| publicId |
2523466 |
| version |
1 |
| longName |
Study Subject |
| shortName |
C41189 |
| definition |
A matter or person that is analyzed, examined, investigated, experimented upon, or treated in the course of particular study. |
| context |
NCIP |
| origin |
NCI Thesaurus |
| workflowStatus |
RELEASED |
| registrationStatus |
Application |
| latestVersionIndicator |
Yes |
| beginDate |
2006-09-27 |
| endDate |
|
| changeDescription |
|
| administrativeNotes |
|
| unresolvedIssues |
|
| deletedIndicator |
No |
| createdBy |
UMLLOADER_DRUGSCREEN |
| dateCreated |
2006-09-27 |
| modifiedBy |
SBREXT |
| dateModified |
2007-11-07 |
| Concepts |
| longName |
Study Subject |
| conceptCode |
C41189 |
| definition |
A matter or an individual that is observed, analyzed, examined, investigated, experimented upon, or/and treated in the course of a particular study. |
| evsSource |
NCI_CONCEPT_CODE |
| primaryIndicator |
Yes |
| displayOrder |
0 |
|
|
|
| Property |
| publicId |
12136495 |
| version |
1 |
| longName |
Taxonomy |
| shortName |
C17469 |
| definition |
The theories and techniques of naming, describing, and classifying organisms, and the study of the relationships of taxa. |
| context |
NCIP |
| origin |
|
| workflowStatus |
RELEASED |
| registrationStatus |
Application |
| latestVersionIndicator |
Yes |
| beginDate |
2022-12-12 |
| endDate |
|
| changeDescription |
|
| administrativeNotes |
|
| unresolvedIssues |
|
| deletedIndicator |
No |
| createdBy |
COLBERTM |
| dateCreated |
2022-12-12 |
| modifiedBy |
COLBERTM |
| dateModified |
2022-12-12 |
| Concepts |
| longName |
Taxonomy |
| conceptCode |
C17469 |
| definition |
The theories and techniques of naming, describing, and classifying organisms, and the study of the relationships of taxa. |
| evsSource |
NCI_CONCEPT_CODE |
| primaryIndicator |
Yes |
| displayOrder |
0 |
|
|
|
| ConceptualDomain |
| publicId |
2435018 |
| version |
1 |
| longName |
Clinical or Research Activity |
| shortName |
C16203 |
| definition |
Any specific activity undertaken during the course of a clinical study or research protocol. |
| context |
NCIP |
| origin |
NCI Thesaurus |
| workflowStatus |
RELEASED |
| registrationStatus |
Application |
| latestVersionIndicator |
Yes |
| beginDate |
2005-12-06 |
| endDate |
|
| changeDescription |
|
| administrativeNotes |
|
| unresolvedIssues |
|
| deletedIndicator |
No |
| createdBy |
CURTIST |
| dateCreated |
2005-12-06 |
| modifiedBy |
SBR |
| dateModified |
2006-12-20 |
|
|
| ValueDomain |
| publicId |
12136510 |
| version |
1 |
| longName |
NCBI Taxonomy Identifier |
| shortName |
12136510v1.00 |
| definition |
A curated classification and nomenclature for the organisms in the public sequence databases that the National Center for Biotechnology Information (NCBI) maintains._One or more characters used to identify, name, or characterize the nature, properties, or contents of a thing. |
| context |
CRDC |
| type |
Enumerated by Reference |
| referenceTerminology |
NCBI Taxonomy|C205300 |
| referenceTerminologyDataValueSource |
Code |
| dataType |
CHARACTER |
| minLength |
|
| maxLength |
50 |
| minValue |
|
| maxValue |
|
| decimalPlace |
|
| origin |
CRDC:Cancer Research Data Commons |
| workflowStatus |
RELEASED |
| registrationStatus |
Qualified |
| latestVersionIndicator |
Yes |
| beginDate |
2022-12-12 |
| endDate |
|
| changeDescription |
|
| administrativeNotes |
6/26/24 Upd to VD Type = Enumerated by Reference; Ref Term Data Value Source = Code. mr;
2/12/24 Added NCBI By Ref PV per DSS request. mr;
2/1/23 Released w CDE per CRDC DSS mtg 2/1. mr;
12/13/22 CDE versioned to comply with by-reference CDE format. New generic DEC and source specified VD. mr;
12/12/22 Created per CRDC DSS. mr |
| unresolvedIssues |
|
| deletedIndicator |
No |
| createdBy |
COLBERTM |
| dateCreated |
2022-12-12 |
| modifiedBy |
COLBERTM |
| dateModified |
2024-06-26 |
| PermissibleValues |
| publicId |
9155343 |
| value |
https://www.ncbi.nlm.nih.gov/taxonomy |
| valueDescription |
|
| origin |
|
| beginDate |
2024-02-12 |
| endDate |
|
| deletedIndicator |
No |
| createdBy |
COLBERTM |
| dateCreated |
2024-02-12 |
| modifiedBy |
COLBERTM |
| dateModified |
2024-06-26 |
| ValueMeaning |
| publicId |
14753627 |
| version |
1 |
| longName |
NCBI Taxonomy |
| shortName |
14753627v1.00 |
| definition |
A curated classification and nomenclature for the organisms in the public sequence databases that the National Center for Biotechnology Information (NCBI) maintains. |
| context |
NCIP |
| origin |
|
| workflowStatus |
RELEASED |
| registrationStatus |
Application |
| latestVersionIndicator |
Yes |
| beginDate |
2024-02-12 |
| endDate |
|
| changeDescription |
|
| administrativeNotes |
|
| unresolvedIssues |
|
| deletedIndicator |
No |
| createdBy |
COLBERTM |
| dateCreated |
2024-02-12 |
| modifiedBy |
COLBERTM |
| dateModified |
2024-06-26 |
| Concepts |
| longName |
NCBI Taxonomy |
| conceptCode |
C205300 |
| definition |
A curated classification and nomenclature for the organisms in the public sequence databases that the National Center for Biotechnology Information (NCBI) maintains. |
| evsSource |
NCI_CONCEPT_CODE |
| primaryIndicator |
Yes |
| displayOrder |
0 |
|
|
|
|
|
| ConceptualDomain |
| publicId |
2435018 |
| version |
1 |
| longName |
Clinical or Research Activity |
| shortName |
C16203 |
| definition |
Any specific activity undertaken during the course of a clinical study or research protocol. |
| context |
NCIP |
| origin |
NCI Thesaurus |
| workflowStatus |
RELEASED |
| registrationStatus |
Application |
| latestVersionIndicator |
Yes |
| beginDate |
2005-12-06 |
| endDate |
|
| changeDescription |
|
| administrativeNotes |
|
| unresolvedIssues |
|
| deletedIndicator |
No |
| createdBy |
CURTIST |
| dateCreated |
2005-12-06 |
| modifiedBy |
SBR |
| dateModified |
2006-12-20 |
|
| RepresentationTerm |
| publicId |
14992634 |
| version |
1 |
| longName |
NCBI Taxonomy Identifier |
| shortName |
14992634v1.00 |
| definition |
A curated classification and nomenclature for the organisms in the public sequence databases that the National Center for Biotechnology Information (NCBI) maintains._One or more characters used to identify, name, or characterize the nature, properties, or contents of a thing. |
| context |
NCIP |
| origin |
|
| workflowStatus |
RELEASED |
| registrationStatus |
Application |
| latestVersionIndicator |
Yes |
| beginDate |
2024-06-26 |
| endDate |
|
| changeDescription |
|
| administrativeNotes |
|
| unresolvedIssues |
|
| deletedIndicator |
No |
| createdBy |
COLBERTM |
| dateCreated |
2024-06-26 |
| modifiedBy |
COLBERTM |
| dateModified |
2024-06-26 |
| Concepts |
| longName |
NCBI Taxonomy |
| conceptCode |
C205300 |
| definition |
A curated classification and nomenclature for the organisms in the public sequence databases that the National Center for Biotechnology Information (NCBI) maintains. |
| evsSource |
NCI_CONCEPT_CODE |
| primaryIndicator |
No |
| displayOrder |
1 |
|
| longName |
Identifier |
| conceptCode |
C25364 |
| definition |
One or more characters used to identify, name, or characterize the nature, properties, or contents of a thing. |
| evsSource |
NCI_CONCEPT_CODE |
| primaryIndicator |
Yes |
| displayOrder |
0 |
|
|
|
|
| ClassificationSchemes |
| publicId |
8064110 |
| version |
1 |
| longName |
GC (General Commons) |
| context |
CRDC |
| workflowStatus |
RELEASED |
| registrationStatus |
Application |
| ClassificationSchemeItems |
| publicId |
14470388 |
| version |
1 |
| longName |
Imaging |
| context |
CRDC |
| workflowStatus |
RELEASED |
| registrationStatus |
Application |
|
|
|
| publicId |
10466051 |
| version |
1 |
| longName |
All CRDC Standard CDEs |
| context |
CRDC |
| workflowStatus |
RELEASED |
| registrationStatus |
Application |
| ClassificationSchemeItems |
| publicId |
10466052 |
| version |
1 |
| longName |
Demographics |
| context |
CRDC |
| workflowStatus |
RELEASED |
| registrationStatus |
Application |
|
|
|
| publicId |
11518160 |
| version |
1 |
| longName |
CTDC (Clinical and Translational Data Commons) |
| context |
CRDC |
| workflowStatus |
RELEASED |
| registrationStatus |
Application |
| ClassificationSchemeItems |
| publicId |
14413707 |
| version |
1 |
| longName |
CTDC Model |
| context |
CRDC |
| workflowStatus |
RELEASED |
| registrationStatus |
Application |
|
| publicId |
14413709 |
| version |
1 |
| longName |
Study |
| context |
CRDC |
| workflowStatus |
RELEASED |
| registrationStatus |
Application |
|
| publicId |
14413711 |
| version |
1 |
| longName |
Subject |
| context |
CRDC |
| workflowStatus |
RELEASED |
| registrationStatus |
Application |
|
|
|
| publicId |
15020003 |
| version |
1 |
| longName |
PSDC (Population Science Data Commons) |
| context |
CRDC |
| workflowStatus |
RELEASED |
| registrationStatus |
Application |
| ClassificationSchemeItems |
| publicId |
15020005 |
| version |
1 |
| longName |
Study |
| context |
CRDC |
| workflowStatus |
RELEASED |
| registrationStatus |
Application |
|
|
|
| publicId |
17012038 |
| version |
1 |
| longName |
IDC (Imaging Data Commons) |
| context |
CRDC |
| workflowStatus |
RELEASED |
| registrationStatus |
Application |
| ClassificationSchemeItems |
| publicId |
17012042 |
| version |
1 |
| longName |
Subject |
| context |
CRDC |
| workflowStatus |
RELEASED |
| registrationStatus |
Application |
|
|
|
|
| AlternateNames |
| name |
NCBI Taxonomy ID |
| type |
CRDC Alt Name |
| context |
CRDC |
|
| name |
TaxId |
| type |
SDO Alt Name |
| context |
NCIP |
|
| name |
ncbi_taxonomy_id |
| type |
CTDC Alt Name |
| context |
CRDC |
|
| name |
species |
| type |
GC Alt Name |
| context |
CRDC |
|
| name |
ncbi_taxonomy_id |
| type |
PSDC Alt Name |
| context |
CRDC |
|
| name |
demographic |
| type |
CTDC Table |
| context |
CRDC |
|
| name |
Participant |
| type |
PSDC Table |
| context |
CRDC |
|
| name |
NCBI Taxonomy ID |
| type |
IDC Alt Name |
| context |
CRDC |
|
|
| ReferenceDocuments |
| documentName |
CRDC Coding Instruction |
| documentText |
Only positive integer values greater than zero should be used as a NCBI taxonomy ID. |
| documentType |
Coding Instructions |
| url |
|
| context |
CRDC |
|
| documentName |
PQT |
| documentText |
NCBI Taxonomy ID |
| documentType |
Preferred Question Text |
| url |
|
| context |
CRDC |
|
| documentName |
CRDC SDO Reference |
| documentText |
NCBI Taxonomy Database |
| documentType |
REFERENCE |
| url |
https://www.ncbi.nlm.nih.gov/taxonomy/ |
| context |
CRDC |
|
| documentName |
CRDC Instruction |
| documentText |
1. Go to https://www.ncbi.nlm.nih.gov/taxonomy
2. Use the search field at the top of the page to locate the organism.
3. Click on the organism name to obtain the Taxonomy ID. |
| documentType |
Instructions |
| url |
|
| context |
CRDC |
|
| documentName |
CRDC Example |
| documentText |
9606 |
| documentType |
EXAMPLE |
| url |
|
| context |
CRDC |
|
|
|